Fig. 2
From: Transcriptome profiling of aerial and subterranean peanut pod development
Expression profiles and DEGs in response to each paired combination. (a) Expression patterns of the top 500 DEGs for each paired combination. Upregulated DEGs are highlighted in red; downregulated DEGs are shown in blue. DEGs were defined using an adjusted p-value < 0.05 and |FC| > 2. (b–e) Venn diagrams of the number of unique and shared DEGs between (b) Air1vsAir2 and Air1vsUnd2; (c) Air2vsUnd2, Air3vsUnd3, Air4_1vsUnd4_1, Air5_1vsUnd5_1, and Air6_1vsUnd6_1; (d) Air4_2vsUnd4_2, Air5_3vsUnd5_3, and Air6_3vsUnd6_3; and (e) Air5_2vsUnd5_2 and Air6_2vsUnd6_2. (f) DEGs involved in the top five GO terms represented in the shared DEGs between the paired combinations Air1vsAir2 and Air1vsUnd2 (Fig. 2b). (g) DEGs involved in the top five GO terms represented in the shared DEGs between the paired combinations Air5_2vsUnd5_2 and Air6_2vsUnd6_2 (Fig. 2e). APP is short for ‘antigen processing and presentation’.
