Table 1 Genome assembly statistics and gene predictions in the Avena longiglumis genome.
From: Chromosome-level genome assembly of the diploid oat species Avena longiglumis
Features | Number | Size |
---|---|---|
Assembly features | ||
Predicted genome size based on k-mer | 3,965,670,000 bp | |
Assembly size | 3,960,965,270 bp | |
Total length of seven pseudo-chromosomes | 3,847,578,604 bp | |
Scaffold N50 length | 527,343,613 bp | |
Scaffold N90 length | 6,968,329 bp | |
Number of scaffolds (>N90) | 9 | |
Longest scaffold (bp) | 594,546,470 bp | |
Contig N50 length | 12,682,464 bp | |
Longest contig | 99,445,397 bp | |
Repetitive DNAs | ||
Retrotransposons | 3,198,067,781 bp (80.74%) | |
DNA transposons | 137,389,012 bp (3.47%) | |
Total repeats | 3,447,484,807 bp (87.04%) | |
Gene annotation | ||
High-confidence (HC) genes | 33,271 | 115,042,134 bp |
Low-confidence (LC) genes | 7,574 | 18,590,004 bp |
Total genes | 40,845 | 133,632,138 bp |
Average length of each gene | 3,272 bp | |
Non-coding RNAs | 16,439 | 2,222,342 bp |