Table 1 Genome assembly statistics and gene predictions in the Avena longiglumis genome.

From: Chromosome-level genome assembly of the diploid oat species Avena longiglumis

Features

Number

Size

Assembly features

Predicted genome size based on k-mer

 

3,965,670,000 bp

Assembly size

 

3,960,965,270 bp

Total length of seven pseudo-chromosomes

 

3,847,578,604 bp

Scaffold N50 length

 

527,343,613 bp

Scaffold N90 length

 

6,968,329 bp

Number of scaffolds (>N90)

 

9

Longest scaffold (bp)

 

594,546,470 bp

Contig N50 length

 

12,682,464 bp

Longest contig

 

99,445,397 bp

Repetitive DNAs

Retrotransposons

 

3,198,067,781 bp (80.74%)

DNA transposons

 

137,389,012 bp (3.47%)

Total repeats

 

3,447,484,807 bp (87.04%)

Gene annotation

High-confidence (HC) genes

33,271

115,042,134 bp

Low-confidence (LC) genes

7,574

18,590,004 bp

Total genes

40,845

133,632,138 bp

Average length of each gene

 

3,272 bp

Non-coding RNAs

16,439

2,222,342 bp