Table 3 Statistics on transposable elements in E. naucrates genome.
From: An improved chromosome-level genome assembly and annotation of Echeneis naucrates
Type | Repbase TEs | TE protiens | De novo | Combined TEs | ||||
|---|---|---|---|---|---|---|---|---|
Length (Bp) | % in genome | Length (Bp) | % in genome | Length (Bp) | % in genome | Length (Bp) | % in genome | |
DNA | 23,226,811 | 3.95 | 4,315,166 | 0.73 | 17,014,011 | 2.89 | 33,789,962 | 5.74 |
LINE | 15,566,251 | 2.65 | 10,793,779 | 1.83 | 13,058,906 | 2.22 | 23,708,510 | 4.03 |
SINE | 4,469,188 | 0.76 | 0 | 0 | 9,252,845 | 1.57 | 13,382,324 | 2.27 |
LTR | 7,628,300 | 1.3 | 3,715,461 | 0.63 | 4,045,882 | 0.69 | 10,854,685 | 1.85 |
Satellite | 1,618,664 | 0.28 | 0 | 0 | 1,282,596 | 0.22 | 2,628,493 | 0.45 |
Simple_repeat | 0 | 0 | 0 | 0 | 28,950 | 0 | 28,950 | 0 |
Other | 4,276 | 0 | 111 | 0 | 0 | 0 | 4,387 | 0 |
Unknown | 421,320 | 0.07 | 11,613 | 0 | 14,599,342 | 2.48 | 14,888,000 | 2.53 |
Total | 48,853,610 | 8.3 | 18,810,305 | 3.2 | 57,392,278 | 9.76 | 91,569,318 | 15.57 |
