Table 4 Statistics of gene predictions in the E. naucrates genome.
From: An improved chromosome-level genome assembly and annotation of Echeneis naucrates
Gene set | Number | Average gene length (bp) | Average CDS length (bp) | Average exon per gene | Average exon length (bp) | Average intron length (bp) | |
|---|---|---|---|---|---|---|---|
denovo | Genscan | 27,258 | 14,277.38 | 1,660.71 | 9.36 | 177.48 | 1,509.65 |
AUGUSTUS | 24,750 | 10,233.76 | 1,476.47 | 8.42 | 175.38 | 1,180.43 | |
Homolog | Caranx_melampygus | 37,229 | 9,333.59 | 1,259.58 | 7.61 | 165.46 | 1,221.00 |
Echeneis_naucrates_ncbi | 30,043 | 11,329.89 | 1,596.51 | 8.92 | 178.96 | 1,228.77 | |
Danio_rerio | 32,853 | 11,344.86 | 1,392.15 | 7.77 | 179.07 | 1,469.17 | |
Seriola_dumerili | 30,681 | 11,034.62 | 1,517.16 | 8.54 | 177.73 | 1,262.87 | |
Takifugu_rubripes | 29,116 | 10,480.93 | 1,497.16 | 8.55 | 175.11 | 1,189.91 | |
Seriola_lalandi | 33,340 | 10,637.15 | 1,477.77 | 8.24 | 179.45 | 1,265.96 | |
RNA-seq | Trans.orf | 4,478 | 12,146.34 | 1,380.29 | 9.48 | 190.79 | 1,219.70 |
BUSCO | 3,645 | 9,567.93 | 1,807.94 | 11.87 | 152.35 | 714.07 | |
MAKER | 22,161 | 12,728.30 | 1,742.10 | 10.08 | 183.00 | 1,198.85 | |
HiCESAP | 22,086 | 11,860.56 | 1,756.47 | 10.19 | 182.11 | 1,088.42 |
