Table 2 Single Nucleotide Polymorphisms (SNPs) across various annotation categories.
From: Whole genome sequences of 70 indigenous Ethiopian cattle
Annotation categories | Count | % of total |
|---|---|---|
Downstream | 2,563,798 | 4.51% |
Exon | 513,998 | 0.90% |
Intergenic | 23,537,404 | 41.41% |
Intron | 27,406,871 | 48.22% |
Splice_site_acceptor | 613 | 0.00% |
Splice_site_donor | 966 | 0.00% |
Splice_site_region | 49,852 | 0.09% |
Transcript | 551 | 0.00% |
Upstream | 2,507,622 | 4.41% |
UTR_3_prime | 176,834 | 0.31% |
UTR_5_prime | 75,531 | 0.13% |
