Table 3 Statistics on transposable elements in the R. albescens genome.
From: The first chromosomal-level genome assembly and annotation of white suckerfish Remora albescens
Type | Repbase TEs | TE protiens | De novo | Combined TEs | ||||
|---|---|---|---|---|---|---|---|---|
Length (Bp) | % in genome | Length (Bp) | % in genome | Length (Bp) | % in genome | Length (Bp) | % in genome | |
DNA | 28,650,770 | 4.69 | 5,755,996 | 0.94 | 23,633,757 | 3.87 | 42,590,519 | 6.98 |
LINE | 25,131,255 | 4.12 | 18,298,621 | 3 | 18,217,820 | 2.98 | 33,034,151 | 5.41 |
SINE | 6,147,830 | 1.01 | 0 | 0 | 4,372,739 | 0.72 | 10,348,445 | 1.69 |
LTR | 10,344,266 | 1.69 | 5,754,470 | 0.94 | 8,481,267 | 1.39 | 15,182,686 | 2.49 |
Satellite | 1,391,046 | 0.23 | 0 | 0 | 1,010,060 | 0.17 | 2,210,026 | 0.36 |
Simple_repeat | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Other | 2,147 | 0 | 363 | 0 | 0 | 0 | 2,510 | 0 |
Unknown | 294,857 | 0.05 | 13,479 | 0 | 14,067,211 | 2.3 | 14,335,996 | 2.35 |
Total | 67,550,139 | 11.06 | 29,804,936 | 4.88 | 68,459,076 | 11.21 | 110,137,154 | 18.04 |
