Table 4 Statistics of gene predictions in the R. albescens genome.
From: The first chromosomal-level genome assembly and annotation of white suckerfish Remora albescens
Gene set | Number | Average gene length (bp) | Average CDS length (bp) | Average exon per gene | Average exon length (bp) | Average intron length (bp) | |
|---|---|---|---|---|---|---|---|
denovo | Genscan | 27,676 | 14,990.17 | 1,625.82 | 9.13 | 178.05 | 1,643.61 |
AUGUSTUS | 25,679 | 10,215.07 | 1,432.42 | 8.13 | 176.20 | 1,231.86 | |
Homolog | Seriola_lalandi | 30,983 | 10,793.53 | 1,515.28 | 8.60 | 176.25 | 1,221.27 |
Seriola_dumerili | 28,457 | 11,143.41 | 1,558.54 | 8.95 | 174.18 | 1,206.00 | |
Echeneis_naucrates | 28,147 | 11,530.16 | 1,610.79 | 9.22 | 174.73 | 1,206.95 | |
Takifugu_rubripes | 27,988 | 10,957.90 | 1,525.02 | 8.77 | 173.92 | 1,214.26 | |
Gasterosteus_aculeatus | 29,609 | 10,829.01 | 1,530.11 | 8.67 | 176.58 | 1,213.10 | |
Danio_rerio | 30,619 | 10,997.90 | 1,414.55 | 8.06 | 175.40 | 1,356.47 | |
RNAseq | Trans.orf | 15,624 | 19,722.53 | 1,962.73 | 12.79 | 361.56 | 1,280.74 |
BUSCO | 3,648 | 9,995.01 | 1,814.18 | 11.85 | 153.05 | 753.76 | |
MAKER | 21,220 | 16,829.75 | 1,786.02 | 11.05 | 309.27 | 1,333.88 | |
HiCESAP | 22,445 | 16,428.03 | 1,754.98 | 11.10 | 327.35 | 1,266.46 |
