Table 1 Comparison of tomato genome assemblies.
From: Chromosome-level genome assembly of Solanum pimpinellifolium
LA1589 (2023) | LA1589 (2012) | LA0716 (2014) | Heinz 1706 (2019) | |
|---|---|---|---|---|
Contig N50 (bp) | 31,220,755 | 5,710 | 1,741,129 | 6,007,830 |
Contig N60 (bp) | 26,821,871 | 4,085 | 1,353,889 | 4,652,653 |
Contig N70 (bp) | 15,037,013 | 2,682 | 1,059,177 | 3,851,369 |
Contig N80 (bp) | 10,225,340 | 1,568 | 763,066 | 2,733,934 |
Contig N90 (bp) | 7,509,232 | 765 | 437,042 | 1,566,229 |
Maximum contig length (bp) | 60,886,717 | 80,806 | 10,011,355 | 26,291,688 |
Number of contigs | 272 | 309,695 | 4,579 | 448 |
Total assembled length (Mb) | 833 | 688 | 942 | 782 |
Anchored to chromosomes (Mb) | 823 | — | 926 | 772 |
Complete BUSCOs (%) | 98.3 | 71.6 | 97.9 | 97.9 |
Number of gene models | 41,449 | 34,727 | 44,965 | 34,075 |
