Table 3 Classification of transposable elements in the S. pimpinellifolium genome.
From: Chromosome-level genome assembly of Solanum pimpinellifolium
Number | Coverage (Mb) | Fraction of genome (%) | |
|---|---|---|---|
LTR/Gypsy | 174,466 | 172,516,542 | 20.94 |
LTR/Copia | 67,848 | 43,662,565 | 5.3 |
LTR/unknown | 127,392 | 74,888,856 | 9.09 |
SINE | 48,430 | 10,955,007 | 1.33 |
LINE | 1,660 | 611,688 | 0.07 |
Total class I | 419,796 | 302,634,658 | 36.74 |
hAT | 15,517 | 7,036,940 | 0.85 |
CACTA | 121,326 | 71,332,210 | 8.66 |
PIF-Harbinger | 29,904 | 17,402,335 | 2.11 |
Mutator | 165,516 | 101,398,344 | 12.31 |
Tc1/Mariner | 22,837 | 9,006,747 | 1.09 |
MITE | 30,955 | 6,299,938 | 0.76 |
Helitron | 225,547 | 98,338,894 | 11.94 |
Total class II | 611,602 | 310,815,408 | 37.73 |
Total TEs | 1,031,398 | 613,450,066 | 74.47 |
