Table 1 Accessibility of the public data sets provided.
From: A multi-omics dataset of the response to early plant polysaccharide ingestion in rabbits
Data set | Database | Accession |
|---|---|---|
Thermal images used to assess nest quality at day 1 | Data INRAE, “J1_1802_cagenumber.jpg” | |
Feeding pattern before weaning of all the rabbits raised during the experiment | Data INRAE, “Milk_consumption.csv”, “Gel_consumption.csv”, “Pellet_consumption.csv”, “Gel_consumption.mp4” and “Gel_consumption_access.mp4” | |
Growth data before and after weaning of all the rabbits raised during the experiment | Data INRAE, “Rabbits_weight.xlsx” | |
Phenotypic characterization of the rabbits sampled | Data INRAE, “Host_data.csv” | |
Transcript profiling | Data INRAE, “RNA_caecum.csv” and “RNA_ileon.csv” | |
16S rDNA sequences | NCBI SRA | |
OTU table and taxonomic affiliations | Data INRAE, “caecal_appendix_microbiome_rabbit_newSILVAdatabase.rdata” and “OTU_abundances.xlsx” | |
Unstratified pathway abundance per sample (from PICRUST2) | Data INRAE, “Path_abun_unstrat_transpo.csv” | |
Microbiota analysis | Data INRAE, “Within_distance_wunifrac.csv” | |
Metabolites quantification | Data INRAE, “Metabolites_caecum.csv” | |
Nest quality assessment using infrared camera | DATA INRAE, Files from “J1_1802_101” to “J1_1802_329” |
