Table 2 Metadata for 16S rRNA gene amplicons sequencing.

From: A multi-omics dataset of the response to early plant polysaccharide ingestion in rabbits

accession

study

bioproject_accession

biosample_accession

sample_ID

luminal_content

library_ID

title

library_strategy

library_source

library_selection

library_layout

platform

instrument_model

design_description

filetype

filename

filename2

SRR11430062

SRP254184

PRJNA615661

SAMN14464043

301

caecum

CP1802-cc301_TCCATT

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc301_TCCATT-C43D4_L001_R1.fastq.gz

CP1802-cc301_TCCATT-C43D4_L001_R2.fastq.gz

SRR11430061

SRP254184

PRJNA615661

SAMN14464044

302

caecum

CP1802-cc302_AAACAA

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc302_AAACAA-C43D4_L001_R1.fastq.gz

CP1802-cc302_AAACAA-C43D4_L001_R2.fastq.gz

SRR11429850

SRP254184

PRJNA615661

SAMN14464045

303

caecum

CP1802-cc303_AATAAT

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc303_AATAAT-C43D4_L001_R1.fastq.gz

CP1802-cc303_AATAAT-C43D4_L001_R2.fastq.gz

SRR11429807

SRP254184

PRJNA615661

SAMN14464046

304

caecum

CP1802-cc304_GCCCGA

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc304_GCCCGA-C43D4_L001_R1.fastq.gz

CP1802-cc304_GCCCGA-C43D4_L001_R2.fastq.gz

SRR11429928

SRP254184

PRJNA615661

SAMN14464047

307

caecum

CP1802-cc307_ACCGAA

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc307_ACCGAA-C43D4_L001_R1.fastq.gz

CP1802-cc307_ACCGAA-C43D4_L001_R2.fastq.gz

SRR11429917

SRP254184

PRJNA615661

SAMN14464048

309

caecum

CP1802-cc309_ACCTCA

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc309_ACCTCA-C43D4_L001_R1.fastq.gz

CP1802-cc309_ACCTCA-C43D4_L001_R2.fastq.gz

SRR11429906

SRP254184

PRJNA615661

SAMN14464049

310

caecum

CP1802-cc310_AGGGAT

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc310_AGGGAT-C43D4_L001_R1.fastq.gz

CP1802-cc310_AGGGAT-C43D4_L001_R2.fastq.gz

SRR11430091

SRP254184

PRJNA615661

SAMN14464050

312

caecum

CP1802-cc312_TGTCTA

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc312_TGTCTA-C43D4_L001_R1.fastq.gz

CP1802-cc312_TGTCTA-C43D4_L001_R2.fastq.gz

SRR11430080

SRP254184

PRJNA615661

SAMN14464051

313

caecum

CP1802-cc313_CGCATT

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc313_CGCATT-C43D4_L001_R1.fastq.gz

CP1802-cc313_CGCATT-C43D4_L001_R2.fastq.gz

SRR11430069

SRP254184

PRJNA615661

SAMN14464052

314

caecum

CP1802-cc314_CCCACG

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc314_CCCACG-C43D4_L001_R1.fastq.gz

CP1802-cc314_CCCACG-C43D4_L001_R2.fastq.gz

SRR11430060

SRP254184

PRJNA615661

SAMN14464053

317

caecum

CP1802-cc317_CCCGAG

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc317_CCCGAG-C43D4_L001_R1.fastq.gz

CP1802-cc317_CCCGAG-C43D4_L001_R2.fastq.gz

SRR11430049

SRP254184

PRJNA615661

SAMN14464054

319

caecum

CP1802-cc319_TTCCGT

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc319_TTCCGT-C43D4_L001_R1.fastq.gz

CP1802-cc319_TTCCGT-C43D4_L001_R2.fastq.gz

SRR11430038

SRP254184

PRJNA615661

SAMN14464055

320

caecum

CP1802-cc320_ATATCC

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc320_ATATCC-C43D4_L001_R1.fastq.gz

CP1802-cc320_ATATCC-C43D4_L001_R2.fastq.gz

SRR11430027

SRP254184

PRJNA615661

SAMN14464056

321

caecum

CP1802-cc321_TCGGCC

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc321_TCGGCC-C43D4_L001_R1.fastq.gz

CP1802-cc321_TCGGCC-C43D4_L001_R2.fastq.gz

SRR11430016

SRP254184

PRJNA615661

SAMN14464057

322

caecum

CP1802-cc322_GTCAGG

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc322_GTCAGG-C43D4_L001_R1.fastq.gz

CP1802-cc322_GTCAGG-C43D4_L001_R2.fastq.gz

SRR11430005

SRP254184

PRJNA615661

SAMN14464058

324

caecum

CP1802-cc324_TAACCG

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc324_TAACCG-C43D4_L001_R1.fastq.gz

CP1802-cc324_TAACCG-C43D4_L001_R2.fastq.gz

SRR11429894

SRP254184

PRJNA615661

SAMN14464059

326

caecum

CP1802-cc326_CAATTA

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc326_CAATTA-C43D4_L001_R1.fastq.gz

CP1802-cc326_CAATTA-C43D4_L001_R2.fastq.gz

SRR11429883

SRP254184

PRJNA615661

SAMN14464060

327

caecum

CP1802-cc327_AGTGTC

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc327_AGTGTC-C43D4_L001_R1.fastq.gz

CP1802-cc327_AGTGTC-C43D4_L001_R2.fastq.gz

SRR11429872

SRP254184

PRJNA615661

SAMN14464061

328

caecum

CP1802-cc328_ATTGAG

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc328_ATTGAG-C43D4_L001_R1.fastq.gz

CP1802-cc328_ATTGAG-C43D4_L001_R2.fastq.gz

SRR11429861

SRP254184

PRJNA615661

SAMN14464062

329

caecum

CP1802-cc329_TATTGG

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc329_TATTGG-C43D4_L001_R1.fastq.gz

CP1802-cc329_TATTGG-C43D4_L001_R2.fastq.gz

SRR11429849

SRP254184

PRJNA615661

SAMN14464063

330

caecum

CP1802-cc330_AACGCA

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc330_AACGCA-C43D4_L001_R1.fastq.gz

CP1802-cc330_AACGCA-C43D4_L001_R2.fastq.gz

SRR11429838

SRP254184

PRJNA615661

SAMN14464064

331

caecum

CP1802-cc331_ACGTCG

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc331_ACGTCG-C43D4_L001_R1.fastq.gz

CP1802-cc331_ACGTCG-C43D4_L001_R2.fastq.gz

SRR11429991

SRP254184

PRJNA615661

SAMN14464065

332

caecum

CP1802-cc332_GTACAG

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc332_GTACAG-C43D4_L001_R1.fastq.gz

CP1802-cc332_GTACAG-C43D4_L001_R2.fastq.gz

SRR11429980

SRP254184

PRJNA615661

SAMN14464066

333

caecum

CP1802-cc333_GTGCTG

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc333_GTGCTG-C43D4_L001_R1.fastq.gz

CP1802-cc333_GTGCTG-C43D4_L001_R2.fastq.gz

SRR11429969

SRP254184

PRJNA615661

SAMN14464067

334

caecum

CP1802-cc334_CAATGC

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc334_CAATGC-C43D4_L001_R1.fastq.gz

CP1802-cc334_CAATGC-C43D4_L001_R2.fastq.gz

SRR11429958

SRP254184

PRJNA615661

SAMN14464068

335

caecum

CP1802-cc335_CCGTAG

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc335_CCGTAG-C43D4_L001_R1.fastq.gz

CP1802-cc335_CCGTAG-C43D4_L001_R2.fastq.gz

SRR11429947

SRP254184

PRJNA615661

SAMN14464069

337

caecum

CP1802-cc337_CTCCCC

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc337_CTCCCC-C43D4_L001_R1.fastq.gz

CP1802-cc337_CTCCCC-C43D4_L001_R2.fastq.gz

SRR11429936

SRP254184

PRJNA615661

SAMN14464070

338

caecum

CP1802-cc338_GACTAC

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc338_GACTAC-C43D4_L001_R1.fastq.gz

CP1802-cc338_GACTAC-C43D4_L001_R2.fastq.gz

SRR11429825

SRP254184

PRJNA615661

SAMN14464071

340

caecum

CP1802-cc340_CATAAC

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc340_CATAAC-C43D4_L001_R1.fastq.gz

CP1802-cc340_CATAAC-C43D4_L001_R2.fastq.gz

SRR11429814

SRP254184

PRJNA615661

SAMN14464072

341

caecum

CP1802-cc341_CCCTCC

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc341_CCCTCC-C43D4_L001_R1.fastq.gz

CP1802-cc341_CCCTCC-C43D4_L001_R2.fastq.gz

SRR11429806

SRP254184

PRJNA615661

SAMN14464073

342

caecum

CP1802-cc342_TGTTCG

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc342_TGTTCG-C43D4_L001_R1.fastq.gz

CP1802-cc342_TGTTCG-C43D4_L001_R2.fastq.gz

SRR11429805

SRP254184

PRJNA615661

SAMN14464074

343

caecum

CP1802-cc343_CATGAG

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc343_CATGAG-C43D4_L001_R1.fastq.gz

CP1802-cc343_CATGAG-C43D4_L001_R2.fastq.gz

SRR11429804

SRP254184

PRJNA615661

SAMN14464075

344

caecum

CP1802-cc344_AAGTGG

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc344_AAGTGG-C43D4_L001_R1.fastq.gz

CP1802-cc344_AAGTGG-C43D4_L001_R2.fastq.gz

SRR11429803

SRP254184

PRJNA615661

SAMN14464076

347

caecum

CP1802-cc347_CTTTAG

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc347_CTTTAG-C43D4_L001_R1.fastq.gz

CP1802-cc347_CTTTAG-C43D4_L001_R2.fastq.gz

SRR11429802

SRP254184

PRJNA615661

SAMN14464077

349

caecum

CP1802-cc349_GAGAAC

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc349_GAGAAC-C43D4_L001_R1.fastq.gz

CP1802-cc349_GAGAAC-C43D4_L001_R2.fastq.gz

SRR11429801

SRP254184

PRJNA615661

SAMN14464078

350

caecum

CP1802-cc350_CCAACA

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc350_CCAACA-C43D4_L001_R1.fastq.gz

CP1802-cc350_CCAACA-C43D4_L001_R2.fastq.gz

SRR11429800

SRP254184

PRJNA615661

SAMN14464079

352

caecum

CP1802-cc352_GTCAAA

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc352_GTCAAA-C43D4_L001_R1.fastq.gz

CP1802-cc352_GTCAAA-C43D4_L001_R2.fastq.gz

SRR11429799

SRP254184

PRJNA615661

SAMN14464080

353

caecum

CP1802-cc353_CCCTGG

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc353_CCCTGG-C43D4_L001_R1.fastq.gz

CP1802-cc353_CCCTGG-C43D4_L001_R2.fastq.gz

SRR11429930

SRP254184

PRJNA615661

SAMN14464081

354

caecum

CP1802-cc354_CGCCAC

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc354_CGCCAC-C43D4_L001_R1.fastq.gz

CP1802-cc354_CGCCAC-C43D4_L001_R2.fastq.gz

SRR11429929

SRP254184

PRJNA615661

SAMN14464082

356

caecum

CP1802-cc356_TAATAT

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc356_TAATAT-C43D4_L001_R1.fastq.gz

CP1802-cc356_TAATAT-C43D4_L001_R2.fastq.gz

SRR11429927

SRP254184

PRJNA615661

SAMN14464083

357

caecum

CP1802-cc357_TGGTGT

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc357_TGGTGT-C43D4_L001_R1.fastq.gz

CP1802-cc357_TGGTGT-C43D4_L001_R2.fastq.gz

SRR11429926

SRP254184

PRJNA615661

SAMN14464084

358

caecum

CP1802-cc358_CTACCG

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc358_CTACCG-C43D4_L001_R1.fastq.gz

CP1802-cc358_CTACCG-C43D4_L001_R2.fastq.gz

SRR11429925

SRP254184

PRJNA615661

SAMN14464085

359

caecum

CP1802-cc359_CGTGCG

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc359_CGTGCG-C43D4_L001_R1.fastq.gz

CP1802-cc359_CGTGCG-C43D4_L001_R2.fastq.gz

SRR11429924

SRP254184

PRJNA615661

SAMN14464086

360

caecum

CP1802-cc360_GATTCA

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc360_GATTCA-C43D4_L001_R1.fastq.gz

CP1802-cc360_GATTCA-C43D4_L001_R2.fastq.gz

SRR11429923

SRP254184

PRJNA615661

SAMN14464087

362

caecum

CP1802-cc362_TACCAA

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc362_TACCAA-C43D4_L001_R1.fastq.gz

CP1802-cc362_TACCAA-C43D4_L001_R2.fastq.gz

SRR11429922

SRP254184

PRJNA615661

SAMN14464088

364

caecum

CP1802-cc364_CGTACT

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc364_CGTACT-C43D4_L001_R1.fastq.gz

CP1802-cc364_CGTACT-C43D4_L001_R2.fastq.gz

SRR11429921

SRP254184

PRJNA615661

SAMN14464089

366

caecum

CP1802-cc366_CACACT

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc366_CACACT-C43D4_L001_R1.fastq.gz

CP1802-cc366_CACACT-C43D4_L001_R2.fastq.gz

SRR11429920

SRP254184

PRJNA615661

SAMN14464090

367

caecum

CP1802-cc367_GAGCAA

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc367_GAGCAA-C9F6J_L001_R1.fastq.gz

CP1802-cc367_GAGCAA-C9F6J_L001_R2.fastq.gz

SRR11429919

SRP254184

PRJNA615661

SAMN14464091

368

caecum

CP1802-cc368_ACTTTT

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc368_ACTTTT-C9F6J_L001_R1.fastq.gz

CP1802-cc368_ACTTTT-C9F6J_L001_R2.fastq.gz

SRR11429918

SRP254184

PRJNA615661

SAMN14464092

369

caecum

CP1802-cc369_ACTCGA

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc369_ACTCGA-C43D4_L001_R1.fastq.gz

CP1802-cc369_ACTCGA-C43D4_L001_R2.fastq.gz

SRR11429916

SRP254184

PRJNA615661

SAMN14464093

370

caecum

CP1802-cc370_TACTCA

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc370_TACTCA-C9F6J_L001_R1.fastq.gz

CP1802-cc370_TACTCA-C9F6J_L001_R2.fastq.gz

SRR11429915

SRP254184

PRJNA615661

SAMN14464094

371

caecum

CP1802-cc371_CAGAGC

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc371_CAGAGC-C43D4_L001_R1.fastq.gz

CP1802-cc371_CAGAGC-C43D4_L001_R2.fastq.gz

SRR11429914

SRP254184

PRJNA615661

SAMN14464095

372

caecum

CP1802-cc372_GGCCTC

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc372_GGCCTC-C9F6J_L001_R1.fastq.gz

CP1802-cc372_GGCCTC-C9F6J_L001_R2.fastq.gz

SRR11429913

SRP254184

PRJNA615661

SAMN14464096

373

caecum

CP1802-cc373_AATCAC

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc373_AATCAC-C43D4_L001_R1.fastq.gz

CP1802-cc373_AATCAC-C43D4_L001_R2.fastq.gz

SRR11429912

SRP254184

PRJNA615661

SAMN14464097

374

caecum

CP1802-cc374_CCCGGC

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc374_CCCGGC-C9F6J_L001_R1.fastq.gz

CP1802-cc374_CCCGGC-C9F6J_L001_R2.fastq.gz

SRR11429911

SRP254184

PRJNA615661

SAMN14464098

375

caecum

CP1802-cc375_TCCCCA

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc375_TCCCCA-C43D4_L001_R1.fastq.gz

CP1802-cc375_TCCCCA-C43D4_L001_R2.fastq.gz

SRR11429910

SRP254184

PRJNA615661

SAMN14464099

377

caecum

CP1802-cc377_CTCTCG

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc377_CTCTCG-C43D4_L001_R1.fastq.gz

CP1802-cc377_CTCTCG-C43D4_L001_R2.fastq.gz

SRR11429909

SRP254184

PRJNA615661

SAMN14464100

378

caecum

CP1802-cc378_CAGATG

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc378_CAGATG-C43D4_L001_R1.fastq.gz

CP1802-cc378_CAGATG-C43D4_L001_R2.fastq.gz

SRR11429908

SRP254184

PRJNA615661

SAMN14464101

380

caecum

CP1802-cc380_GCCGGT

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc380_GCCGGT-C9F6J_L001_R1.fastq.gz

CP1802-cc380_GCCGGT-C9F6J_L001_R2.fastq.gz

SRR11429907

SRP254184

PRJNA615661

SAMN14464102

381

caecum

CP1802-cc381_CAGTCT

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc381_CAGTCT-C43D4_L001_R1.fastq.gz

CP1802-cc381_CAGTCT-C43D4_L001_R2.fastq.gz

SRR11429905

SRP254184

PRJNA615661

SAMN14464103

382

caecum

CP1802-cc382_AAATTG

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc382_AAATTG-C43D4_L001_R1.fastq.gz

CP1802-cc382_AAATTG-C43D4_L001_R2.fastq.gz

SRR11429904

SRP254184

PRJNA615661

SAMN14464104

383

caecum

CP1802-cc383_AGTTTG

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc383_AGTTTG-C43D4_L001_R1.fastq.gz

CP1802-cc383_AGTTTG-C43D4_L001_R2.fastq.gz

SRR11429903

SRP254184

PRJNA615661

SAMN14464105

384

caecum

CP1802-cc384_TCTCGG

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc384_TCTCGG-C43D4_L001_R1.fastq.gz

CP1802-cc384_TCTCGG-C43D4_L001_R2.fastq.gz

SRR11429902

SRP254184

PRJNA615661

SAMN14464106

387

caecum

CP1802-cc387_ACTGCG

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc387_ACTGCG-C9F6J_L001_R1.fastq.gz

CP1802-cc387_ACTGCG-C9F6J_L001_R2.fastq.gz

SRR11429901

SRP254184

PRJNA615661

SAMN14464107

389

caecum

CP1802-cc389_ATTAGG

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc389_ATTAGG-C9F6J_L001_R1.fastq.gz

CP1802-cc389_ATTAGG-C9F6J_L001_R2.fastq.gz

SRR11429900

SRP254184

PRJNA615661

SAMN14464108

390

caecum

CP1802-cc390_ACAGTT

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc390_ACAGTT-C43D4_L001_R1.fastq.gz

CP1802-cc390_ACAGTT-C43D4_L001_R2.fastq.gz

SRR11429899

SRP254184

PRJNA615661

SAMN14464109

392

caecum

CP1802-cc392_GCTATC

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc392_GCTATC-C43D4_L001_R1.fastq.gz

CP1802-cc392_GCTATC-C43D4_L001_R2.fastq.gz

SRR11430094

SRP254184

PRJNA615661

SAMN14464110

393

caecum

CP1802-cc393_TTAAAT

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc393_TTAAAT-C43D4_L001_R1.fastq.gz

CP1802-cc393_TTAAAT-C43D4_L001_R2.fastq.gz

SRR11430093

SRP254184

PRJNA615661

SAMN14464111

394

caecum

CP1802-cc394_TTTGTA

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc394_TTTGTA-C43D4_L001_R1.fastq.gz

CP1802-cc394_TTTGTA-C43D4_L001_R2.fastq.gz

SRR11430092

SRP254184

PRJNA615661

SAMN14464112

396

caecum

CP1802-cc396_GTTACC

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc396_GTTACC-C43D4_L001_R1.fastq.gz

CP1802-cc396_GTTACC-C43D4_L001_R2.fastq.gz

SRR11430090

SRP254184

PRJNA615661

SAMN14464113

397

caecum

CP1802-cc397_CCATTG

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc397_CCATTG-C43D4_L001_R1.fastq.gz

CP1802-cc397_CCATTG-C43D4_L001_R2.fastq.gz

SRR11430089

SRP254184

PRJNA615661

SAMN14464114

398

caecum

CP1802-cc398_TCGCGC

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc398_TCGCGC-C43D4_L001_R1.fastq.gz

CP1802-cc398_TCGCGC-C43D4_L001_R2.fastq.gz

SRR11430088

SRP254184

PRJNA615661

SAMN14464115

399

caecum

CP1802-cc399_TAACTT

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc399_TAACTT-C43D4_L001_R1.fastq.gz

CP1802-cc399_TAACTT-C43D4_L001_R2.fastq.gz

SRR11430087

SRP254184

PRJNA615661

SAMN14464116

400

caecum

CP1802-cc400_GGACTT

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc400_GGACTT-C9F6J_L001_R1.fastq.gz

CP1802-cc400_GGACTT-C9F6J_L001_R2.fastq.gz

SRR11430086

SRP254184

PRJNA615661

SAMN14464117

402

caecum

CP1802-cc402_TCGAAC

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc402_TCGAAC-C9F6J_L001_R1.fastq.gz

CP1802-cc402_TCGAAC-C9F6J_L001_R2.fastq.gz

SRR11430085

SRP254184

PRJNA615661

SAMN14464118

404

caecum

CP1802-cc404_CCGACC

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc404_CCGACC-C43D4_L001_R1.fastq.gz

CP1802-cc404_CCGACC-C43D4_L001_R2.fastq.gz

SRR11430084

SRP254184

PRJNA615661

SAMN14464119

406

caecum

CP1802-cc406_CAGTCT

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc406_CAGTCT-C9F6J_L001_R1.fastq.gz

CP1802-cc406_CAGTCT-C9F6J_L001_R2.fastq.gz

SRR11430083

SRP254184

PRJNA615661

SAMN14464120

407

caecum

CP1802-cc407_GACAGT

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc407_GACAGT-C9F6J_L001_R1.fastq.gz

CP1802-cc407_GACAGT-C9F6J_L001_R2.fastq.gz

SRR11430082

SRP254184

PRJNA615661

SAMN14464121

408

caecum

CP1802-cc408_TTTTTC

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc408_TTTTTC-C9F6J_L001_R1.fastq.gz

CP1802-cc408_TTTTTC-C9F6J_L001_R2.fastq.gz

SRR11430081

SRP254184

PRJNA615661

SAMN14464122

409

caecum

CP1802-cc409_TGCCTT

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc409_TGCCTT-C9F6J_L001_R1.fastq.gz

CP1802-cc409_TGCCTT-C9F6J_L001_R2.fastq.gz

SRR11430079

SRP254184

PRJNA615661

SAMN14464123

410

caecum

CP1802-cc410_GGTAGC

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc410_GGTAGC-C43D4_L001_R1.fastq.gz

CP1802-cc410_GGTAGC-C43D4_L001_R2.fastq.gz

SRR11430078

SRP254184

PRJNA615661

SAMN14464124

411

caecum

CP1802-cc411_GCTATC

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc411_GCTATC-C9F6J_L001_R1.fastq.gz

CP1802-cc411_GCTATC-C9F6J_L001_R2.fastq.gz

SRR11430077

SRP254184

PRJNA615661

SAMN14464125

412

caecum

CP1802-cc412_TTAGCT

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc412_TTAGCT-C9F6J_L001_R1.fastq.gz

CP1802-cc412_TTAGCT-C9F6J_L001_R2.fastq.gz

SRR11430076

SRP254184

PRJNA615661

SAMN14464126

413

caecum

CP1802-cc413_GCAAAT

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc413_GCAAAT-C43D4_L001_R1.fastq.gz

CP1802-cc413_GCAAAT-C43D4_L001_R2.fastq.gz

SRR11430075

SRP254184

PRJNA615661

SAMN14464127

414

caecum

CP1802-cc414_TCGCGC

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc414_TCGCGC-C9F6J_L001_R1.fastq.gz

CP1802-cc414_TCGCGC-C9F6J_L001_R2.fastq.gz

SRR11430074

SRP254184

PRJNA615661

SAMN14464128

415

caecum

CP1802-cc415_ACATAT

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc415_ACATAT-C43D4_L001_R1.fastq.gz

CP1802-cc415_ACATAT-C43D4_L001_R2.fastq.gz

SRR11430073

SRP254184

PRJNA615661

SAMN14464129

417

caecum

CP1802-cc417_GAGCTT

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc417_GAGCTT-C43D4_L001_R1.fastq.gz

CP1802-cc417_GAGCTT-C43D4_L001_R2.fastq.gz

SRR11430072

SRP254184

PRJNA615661

SAMN14464130

418

caecum

CP1802-cc418_CTACGC

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc418_CTACGC-C9F6J_L001_R1.fastq.gz

CP1802-cc418_CTACGC-C9F6J_L001_R2.fastq.gz

SRR11430071

SRP254184

PRJNA615661

SAMN14464131

420

caecum

CP1802-cc420_GCCAAG

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc420_GCCAAG-C43D4_L001_R1.fastq.gz

CP1802-cc420_GCCAAG-C43D4_L001_R2.fastq.gz

SRR11430070

SRP254184

PRJNA615661

SAMN14464132

421

caecum

CP1802-cc421_TGCTGA

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc421_TGCTGA-C9F6J_L001_R1.fastq.gz

CP1802-cc421_TGCTGA-C9F6J_L001_R2.fastq.gz

SRR11430068

SRP254184

PRJNA615661

SAMN14464133

422

caecum

CP1802-cc422_TTTTTC

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc422_TTTTTC-C43D4_L001_R1.fastq.gz

CP1802-cc422_TTTTTC-C43D4_L001_R2.fastq.gz

SRR11430067

SRP254184

PRJNA615661

SAMN14464134

423

caecum

CP1802-cc423_GTCGTG

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc423_GTCGTG-C43D4_L001_R1.fastq.gz

CP1802-cc423_GTCGTG-C43D4_L001_R2.fastq.gz

SRR11430066

SRP254184

PRJNA615661

SAMN14464135

424

caecum

CP1802-cc424_GAGCTT

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc424_GAGCTT-C9F6J_L001_R1.fastq.gz

CP1802-cc424_GAGCTT-C9F6J_L001_R2.fastq.gz

SRR11430065

SRP254184

PRJNA615661

SAMN14464136

427

caecum

CP1802-cc427_GCCTAA

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc427_GCCTAA-C9F6J_L001_R1.fastq.gz

CP1802-cc427_GCCTAA-C9F6J_L001_R2.fastq.gz

SRR11430064

SRP254184

PRJNA615661

SAMN14464137

429

caecum

CP1802-cc429_TTGCTA

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc429_TTGCTA-C9F6J_L001_R1.fastq.gz

CP1802-cc429_TTGCTA-C9F6J_L001_R2.fastq.gz

SRR11430063

SRP254184

PRJNA615661

SAMN14464138

430

caecum

CP1802-cc430_GCAAAT

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc430_GCAAAT-C9F6J_L001_R1.fastq.gz

CP1802-cc430_GCAAAT-C9F6J_L001_R2.fastq.gz

SRR11429898

SRP254184

PRJNA615661

SAMN14464139

432

caecum

CP1802-cc432_TACCTG

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc432_TACCTG-C9F6J_L001_R1.fastq.gz

CP1802-cc432_TACCTG-C9F6J_L001_R2.fastq.gz

SRR11429897

SRP254184

PRJNA615661

SAMN14464140

433

caecum

CP1802-cc433_GTAACA

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc433_GTAACA-C43D4_L001_R1.fastq.gz

CP1802-cc433_GTAACA-C43D4_L001_R2.fastq.gz

SRR11429896

SRP254184

PRJNA615661

SAMN14464141

434

caecum

CP1802-cc434_GTGGGG

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc434_GTGGGG-C9F6J_L001_R1.fastq.gz

CP1802-cc434_GTGGGG-C9F6J_L001_R2.fastq.gz

SRR11429895

SRP254184

PRJNA615661

SAMN14464142

436

caecum

CP1802-cc436_TGCTCC

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc436_TGCTCC-C9F6J_L001_R1.fastq.gz

CP1802-cc436_TGCTCC-C9F6J_L001_R2.fastq.gz

SRR11430059

SRP254184

PRJNA615661

SAMN14464143

437

caecum

CP1802-cc437_TCACAC

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc437_TCACAC-C9F6J_L001_R1.fastq.gz

CP1802-cc437_TCACAC-C9F6J_L001_R2.fastq.gz

SRR11430058

SRP254184

PRJNA615661

SAMN14464144

438

caecum

CP1802-cc438_CTACAT

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc438_CTACAT-C9F6J_L001_R1.fastq.gz

CP1802-cc438_CTACAT-C9F6J_L001_R2.fastq.gz

SRR11430057

SRP254184

PRJNA615661

SAMN14464145

439

caecum

CP1802-cc439_GCAGCT

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc439_GCAGCT-C43D4_L001_R1.fastq.gz

CP1802-cc439_GCAGCT-C43D4_L001_R2.fastq.gz

SRR11430056

SRP254184

PRJNA615661

SAMN14464146

440

caecum

CP1802-cc440_AACGCA

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc440_AACGCA-C9F6J_L001_R1.fastq.gz

CP1802-cc440_AACGCA-C9F6J_L001_R2.fastq.gz

SRR11430055

SRP254184

PRJNA615661

SAMN14464147

442

caecum

CP1802-cc442_GGAGGT

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc442_GGAGGT-C43D4_L001_R1.fastq.gz

CP1802-cc442_GGAGGT-C43D4_L001_R2.fastq.gz

SRR11430054

SRP254184

PRJNA615661

SAMN14464148

444

caecum

CP1802-cc444_TGCGGG

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc444_TGCGGG-C9F6J_L001_R1.fastq.gz

CP1802-cc444_TGCGGG-C9F6J_L001_R2.fastq.gz

SRR11430053

SRP254184

PRJNA615661

SAMN14464149

446

caecum

CP1802-cc446_GGACGG

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc446_GGACGG-C9F6J_L001_R1.fastq.gz

CP1802-cc446_GGACGG-C9F6J_L001_R2.fastq.gz

SRR11430052

SRP254184

PRJNA615661

SAMN14464150

447

caecum

CP1802-cc447_GTTTCT

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc447_GTTTCT-C9F6J_L001_R1.fastq.gz

CP1802-cc447_GTTTCT-C9F6J_L001_R2.fastq.gz

SRR11430051

SRP254184

PRJNA615661

SAMN14464151

448

caecum

CP1802-cc448_ATGAAC

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc448_ATGAAC-C9F6J_L001_R1.fastq.gz

CP1802-cc448_ATGAAC-C9F6J_L001_R2.fastq.gz

SRR11430050

SRP254184

PRJNA615661

SAMN14464152

449

caecum

CP1802-cc449_TCTATG

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc449_TCTATG-C9F6J_L001_R1.fastq.gz

CP1802-cc449_TCTATG-C9F6J_L001_R2.fastq.gz

SRR11430048

SRP254184

PRJNA615661

SAMN14464153

450

caecum

CP1802-cc450_CTAGAG

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc450_CTAGAG-C9F6J_L001_R1.fastq.gz

CP1802-cc450_CTAGAG-C9F6J_L001_R2.fastq.gz

SRR11430047

SRP254184

PRJNA615661

SAMN14464154

451

caecum

CP1802-cc451_AATTGC

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc451_AATTGC-C9F6J_L001_R1.fastq.gz

CP1802-cc451_AATTGC-C9F6J_L001_R2.fastq.gz

SRR11430046

SRP254184

PRJNA615661

SAMN14464155

452

caecum

CP1802-cc452_ATGCTT

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc452_ATGCTT-C9F6J_L001_R1.fastq.gz

CP1802-cc452_ATGCTT-C9F6J_L001_R2.fastq.gz

SRR11430045

SRP254184

PRJNA615661

SAMN14464156

453

caecum

CP1802-cc453_AGAGGG

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc453_AGAGGG-C9F6J_L001_R1.fastq.gz

CP1802-cc453_AGAGGG-C9F6J_L001_R2.fastq.gz

SRR11430044

SRP254184

PRJNA615661

SAMN14464157

454

caecum

CP1802-cc454_CCCAAA

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc454_CCCAAA-C9F6J_L001_R1.fastq.gz

CP1802-cc454_CCCAAA-C9F6J_L001_R2.fastq.gz

SRR11430043

SRP254184

PRJNA615661

SAMN14464158

455

caecum

CP1802-cc455_GATGCT

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc455_GATGCT-C9F6J_L001_R1.fastq.gz

CP1802-cc455_GATGCT-C9F6J_L001_R2.fastq.gz

SRR11430042

SRP254184

PRJNA615661

SAMN14464159

457

caecum

CP1802-cc457_CTCTAC

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc457_CTCTAC-C9F6J_L001_R1.fastq.gz

CP1802-cc457_CTCTAC-C9F6J_L001_R2.fastq.gz

SRR11430041

SRP254184

PRJNA615661

SAMN14464160

458

caecum

CP1802-cc458_CAGGAC

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc458_CAGGAC-C43D4_L001_R1.fastq.gz

CP1802-cc458_CAGGAC-C43D4_L001_R2.fastq.gz

SRR11430040

SRP254184

PRJNA615661

SAMN14464161

460

caecum

CP1802-cc460_CCTTGA

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc460_CCTTGA-C9F6J_L001_R1.fastq.gz

CP1802-cc460_CCTTGA-C9F6J_L001_R2.fastq.gz

SRR11430039

SRP254184

PRJNA615661

SAMN14464162

461

caecum

CP1802-cc461_GTAGAA

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc461_GTAGAA-C9F6J_L001_R1.fastq.gz

CP1802-cc461_GTAGAA-C9F6J_L001_R2.fastq.gz

SRR11430037

SRP254184

PRJNA615661

SAMN14464163

463

caecum

CP1802-cc463_CAACAG

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc463_CAACAG-C9F6J_L001_R1.fastq.gz

CP1802-cc463_CAACAG-C9F6J_L001_R2.fastq.gz

SRR11430036

SRP254184

PRJNA615661

SAMN14464164

465

caecum

CP1802-cc465_CTTGCA

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc465_CTTGCA-C9F6J_L001_R1.fastq.gz

CP1802-cc465_CTTGCA-C9F6J_L001_R2.fastq.gz

SRR11430035

SRP254184

PRJNA615661

SAMN14464165

466

caecum

CP1802-cc466_GGTAGC

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc466_GGTAGC-C9F6J_L001_R1.fastq.gz

CP1802-cc466_GGTAGC-C9F6J_L001_R2.fastq.gz

SRR11430034

SRP254184

PRJNA615661

SAMN14464166

467

caecum

CP1802-cc467_TGGATT

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc467_TGGATT-C9F6J_L001_R1.fastq.gz

CP1802-cc467_TGGATT-C9F6J_L001_R2.fastq.gz

SRR11430033

SRP254184

PRJNA615661

SAMN14464167

468

caecum

CP1802-cc468_AGGATA

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc468_AGGATA-C43D4_L001_R1.fastq.gz

CP1802-cc468_AGGATA-C43D4_L001_R2.fastq.gz

SRR11430032

SRP254184

PRJNA615661

SAMN14464168

469

caecum

CP1802-cc469_TTCGAG

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc469_TTCGAG-C9F6J_L001_R1.fastq.gz

CP1802-cc469_TTCGAG-C9F6J_L001_R2.fastq.gz

SRR11430031

SRP254184

PRJNA615661

SAMN14464169

471

caecum

CP1802-cc471_CTGTAA

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc471_CTGTAA-C9F6J_L001_R1.fastq.gz

CP1802-cc471_CTGTAA-C9F6J_L001_R2.fastq.gz

SRR11430030

SRP254184

PRJNA615661

SAMN14464170

472

caecum

CP1802-cc472_TCCCCA

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc472_TCCCCA-C9F6J_L001_R1.fastq.gz

CP1802-cc472_TCCCCA-C9F6J_L001_R2.fastq.gz

SRR11430029

SRP254184

PRJNA615661

SAMN14464171

474

caecum

CP1802-cc474_GTTCGC

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc474_GTTCGC-C9F6J_L001_R1.fastq.gz

CP1802-cc474_GTTCGC-C9F6J_L001_R2.fastq.gz

SRR11430028

SRP254184

PRJNA615661

SAMN14464172

475

caecum

CP1802-cc475_TCTCGG

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc475_TCTCGG-C9F6J_L001_R1.fastq.gz

CP1802-cc475_TCTCGG-C9F6J_L001_R2.fastq.gz

SRR11430026

SRP254184

PRJNA615661

SAMN14464173

476

caecum

CP1802-cc476_ATAAGA

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc476_ATAAGA-C9F6J_L001_R1.fastq.gz

CP1802-cc476_ATAAGA-C9F6J_L001_R2.fastq.gz

SRR11430025

SRP254184

PRJNA615661

SAMN14464174

478

caecum

CP1802-cc478_ACAGTT

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc478_ACAGTT-C9F6J_L001_R1.fastq.gz

CP1802-cc478_ACAGTT-C9F6J_L001_R2.fastq.gz

SRR11430024

SRP254184

PRJNA615661

SAMN14464175

479

caecum

CP1802-cc479_TTGCCC

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc479_TTGCCC-C9F6J_L001_R1.fastq.gz

CP1802-cc479_TTGCCC-C9F6J_L001_R2.fastq.gz

SRR11430023

SRP254184

PRJNA615661

SAMN14464176

480

caecum

CP1802-cc480_AAATTG

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc480_AAATTG-C9F6J_L001_R1.fastq.gz

CP1802-cc480_AAATTG-C9F6J_L001_R2.fastq.gz

SRR11430022

SRP254184

PRJNA615661

SAMN14464177

481

caecum

CP1802-cc481_TTAAAT

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc481_TTAAAT-C9F6J_L001_R1.fastq.gz

CP1802-cc481_TTAAAT-C9F6J_L001_R2.fastq.gz

SRR11430021

SRP254184

PRJNA615661

SAMN14464178

482

caecum

CP1802-cc482_AGGTTC

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc482_AGGTTC-C9F6J_L001_R1.fastq.gz

CP1802-cc482_AGGTTC-C9F6J_L001_R2.fastq.gz

SRR11430020

SRP254184

PRJNA615661

SAMN14464179

483

caecum

CP1802-cc483_ACTCGA

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc483_ACTCGA-C9F6J_L001_R1.fastq.gz

CP1802-cc483_ACTCGA-C9F6J_L001_R2.fastq.gz

SRR11430019

SRP254184

PRJNA615661

SAMN14464180

484

caecum

CP1802-cc484_TTTGTA

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc484_TTTGTA-C9F6J_L001_R1.fastq.gz

CP1802-cc484_TTTGTA-C9F6J_L001_R2.fastq.gz

SRR11430018

SRP254184

PRJNA615661

SAMN14464181

485

caecum

CP1802-cc485_CAGATG

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc485_CAGATG-C9F6J_L001_R1.fastq.gz

CP1802-cc485_CAGATG-C9F6J_L001_R2.fastq.gz

SRR11430017

SRP254184

PRJNA615661

SAMN14464182

486

caecum

CP1802-cc486_AGCCTG

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc486_AGCCTG-C9F6J_L001_R1.fastq.gz

CP1802-cc486_AGCCTG-C9F6J_L001_R2.fastq.gz

SRR11430015

SRP254184

PRJNA615661

SAMN14464183

488

caecum

CP1802-cc488_CATGTT

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc488_CATGTT-C9F6J_L001_R1.fastq.gz

CP1802-cc488_CATGTT-C9F6J_L001_R2.fastq.gz

SRR11430014

SRP254184

PRJNA615661

SAMN14464184

489

caecum

CP1802-cc489_CCATTG

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc489_CCATTG-C9F6J_L001_R1.fastq.gz

CP1802-cc489_CCATTG-C9F6J_L001_R2.fastq.gz

SRR11430013

SRP254184

PRJNA615661

SAMN14464185

491

caecum

CP1802-cc491_TATGCG

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc491_TATGCG-C9F6J_L001_R1.fastq.gz

CP1802-cc491_TATGCG-C9F6J_L001_R2.fastq.gz

SRR11430012

SRP254184

PRJNA615661

SAMN14464186

493

caecum

CP1802-cc493_ACATAT

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc493_ACATAT-C9F6J_L001_R1.fastq.gz

CP1802-cc493_ACATAT-C9F6J_L001_R2.fastq.gz

SRR11430011

SRP254184

PRJNA615661

SAMN14464187

494

caecum

CP1802-cc494_CAGAGC

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc494_CAGAGC-C9F6J_L001_R1.fastq.gz

CP1802-cc494_CAGAGC-C9F6J_L001_R2.fastq.gz

SRR11430010

SRP254184

PRJNA615661

SAMN14464188

495

caecum

CP1802-cc495_AATATG

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc495_AATATG-C9F6J_L001_R1.fastq.gz

CP1802-cc495_AATATG-C9F6J_L001_R2.fastq.gz

SRR11430009

SRP254184

PRJNA615661

SAMN14464189

497

caecum

CP1802-cc497_AATCAC

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc497_AATCAC-C9F6J_L001_R1.fastq.gz

CP1802-cc497_AATCAC-C9F6J_L001_R2.fastq.gz

SRR11430008

SRP254184

PRJNA615661

SAMN14464190

499

caecum

CP1802-cc499_CTCTCG

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc499_CTCTCG-C9F6J_L001_R1.fastq.gz

CP1802-cc499_CTCTCG-C9F6J_L001_R2.fastq.gz

SRR11430007

SRP254184

PRJNA615661

SAMN14464191

500

caecum

CP1802-cc500_CACACT

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802-cc500_CACACT-C9F6J_L001_R1.fastq.gz

CP1802-cc500_CACACT-C9F6J_L001_R2.fastq.gz

SRR11430006

SRP254184

PRJNA615661

SAMN14464192

301

appendix_vermiformis

CP1802v301_CTGAGG-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v301_CTGAGG-CCCBN_L001_R1.fastq.gz

CP1802v301_CTGAGG-CCCBN_L001_R2.fastq.gz

SRR11430004

SRP254184

PRJNA615661

SAMN14464193

302

appendix_vermiformis

CP1802v302_TCATCA-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v302_TCATCA-CCCBN_L001_R1.fastq.gz

CP1802v302_TCATCA-CCCBN_L001_R2.fastq.gz

SRR11430003

SRP254184

PRJNA615661

SAMN14464194

303

appendix_vermiformis

CP1802v303_CTTGCA-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v303_CTTGCA-CCCBN_L001_R1.fastq.gz

CP1802v303_CTTGCA-CCCBN_L001_R2.fastq.gz

SRR11430002

SRP254184

PRJNA615661

SAMN14464195

304

appendix_vermiformis

CP1802v304_CATGTT-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v304_CATGTT-CCCBN_L001_R1.fastq.gz

CP1802v304_CATGTT-CCCBN_L001_R2.fastq.gz

SRR11430001

SRP254184

PRJNA615661

SAMN14464196

309

appendix_vermiformis

CP1802v309_TTCGAG-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v309_TTCGAG-CCCBN_L001_R1.fastq.gz

CP1802v309_TTCGAG-CCCBN_L001_R2.fastq.gz

SRR11430000

SRP254184

PRJNA615661

SAMN14464197

310

appendix_vermiformis

CP1802v310_AAGCTA-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v310_AAGCTA-CCCBN_L001_R1.fastq.gz

CP1802v310_AAGCTA-CCCBN_L001_R2.fastq.gz

SRR11429999

SRP254184

PRJNA615661

SAMN14464198

312

appendix_vermiformis

CP1802v312_TCCCCA-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v312_TCCCCA-CCCBN_L001_R1.fastq.gz

CP1802v312_TCCCCA-CCCBN_L001_R2.fastq.gz

SRR11429998

SRP254184

PRJNA615661

SAMN14464199

313

appendix_vermiformis

CP1802v313_AACTAG-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v313_AACTAG-CCCBN_L001_R1.fastq.gz

CP1802v313_AACTAG-CCCBN_L001_R2.fastq.gz

SRR11429997

SRP254184

PRJNA615661

SAMN14464200

314

appendix_vermiformis

CP1802v314_GTTCGC-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v314_GTTCGC-CCCBN_L001_R1.fastq.gz

CP1802v314_GTTCGC-CCCBN_L001_R2.fastq.gz

SRR11429996

SRP254184

PRJNA615661

SAMN14464201

316

appendix_vermiformis

CP1802v316_ATAAGA-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v316_ATAAGA-CCCBN_L001_R1.fastq.gz

CP1802v316_ATAAGA-CCCBN_L001_R2.fastq.gz

SRR11429995

SRP254184

PRJNA615661

SAMN14464202

319

appendix_vermiformis

CP1802v319_ACAGTT-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v319_ACAGTT-CCCBN_L001_R1.fastq.gz

CP1802v319_ACAGTT-CCCBN_L001_R2.fastq.gz

SRR11429893

SRP254184

PRJNA615661

SAMN14464203

320

appendix_vermiformis

CP1802v320_TTGCCC-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v320_TTGCCC-CCCBN_L001_R1.fastq.gz

CP1802v320_TTGCCC-CCCBN_L001_R2.fastq.gz

SRR11429892

SRP254184

PRJNA615661

SAMN14464204

321

appendix_vermiformis

CP1802v321_CAGTCT-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v321_CAGTCT-CCCBN_L001_R1.fastq.gz

CP1802v321_CAGTCT-CCCBN_L001_R2.fastq.gz

SRR11429891

SRP254184

PRJNA615661

SAMN14464205

322

appendix_vermiformis

CP1802v322_TTAAAT-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v322_TTAAAT-CCCBN_L001_R1.fastq.gz

CP1802v322_TTAAAT-CCCBN_L001_R2.fastq.gz

SRR11429890

SRP254184

PRJNA615661

SAMN14464206

324

appendix_vermiformis

CP1802v324_ACTCGA-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v324_ACTCGA-CCCBN_L001_R1.fastq.gz

CP1802v324_ACTCGA-CCCBN_L001_R2.fastq.gz

SRR11429889

SRP254184

PRJNA615661

SAMN14464207

326

appendix_vermiformis

CP1802v326_CAGATG-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v326_CAGATG-CCCBN_L001_R1.fastq.gz

CP1802v326_CAGATG-CCCBN_L001_R2.fastq.gz

SRR11429888

SRP254184

PRJNA615661

SAMN14464208

327

appendix_vermiformis

CP1802v327_TCGCGC-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v327_TCGCGC-CCCBN_L001_R1.fastq.gz

CP1802v327_TCGCGC-CCCBN_L001_R2.fastq.gz

SRR11429887

SRP254184

PRJNA615661

SAMN14464209

328

appendix_vermiformis

CP1802v328_TAACTT-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v328_TAACTT-CCCBN_L001_R1.fastq.gz

CP1802v328_TAACTT-CCCBN_L001_R2.fastq.gz

SRR11429886

SRP254184

PRJNA615661

SAMN14464210

329

appendix_vermiformis

CP1802v329_CTGTAA-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v329_CTGTAA-CCCBN_L001_R1.fastq.gz

CP1802v329_CTGTAA-CCCBN_L001_R2.fastq.gz

SRR11429885

SRP254184

PRJNA615661

SAMN14464211

330

appendix_vermiformis

CP1802v330_CCATTG-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v330_CCATTG-CCCBN_L001_R1.fastq.gz

CP1802v330_CCATTG-CCCBN_L001_R2.fastq.gz

SRR11429884

SRP254184

PRJNA615661

SAMN14464212

331

appendix_vermiformis

CP1802v331_TAGGCT-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v331_TAGGCT-CCCBN_L001_R1.fastq.gz

CP1802v331_TAGGCT-CCCBN_L001_R2.fastq.gz

SRR11429882

SRP254184

PRJNA615661

SAMN14464213

332

appendix_vermiformis

CP1802v332_TTCTTG-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v332_TTCTTG-CCCBN_L001_R1.fastq.gz

CP1802v332_TTCTTG-CCCBN_L001_R2.fastq.gz

SRR11429881

SRP254184

PRJNA615661

SAMN14464214

333

appendix_vermiformis

CP1802v333_CCGACC-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v333_CCGACC-CCCBN_L001_R1.fastq.gz

CP1802v333_CCGACC-CCCBN_L001_R2.fastq.gz

SRR11429880

SRP254184

PRJNA615661

SAMN14464215

334

appendix_vermiformis

CP1802v334_TTAGCT-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v334_TTAGCT-CCCBN_L001_R1.fastq.gz

CP1802v334_TTAGCT-CCCBN_L001_R2.fastq.gz

SRR11429879

SRP254184

PRJNA615661

SAMN14464216

335

appendix_vermiformis

CP1802v335_CAGAGC-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v335_CAGAGC-CCCBN_L001_R1.fastq.gz

CP1802v335_CAGAGC-CCCBN_L001_R2.fastq.gz

SRR11429878

SRP254184

PRJNA615661

SAMN14464217

337

appendix_vermiformis

CP1802v337_ATTCTC-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v337_ATTCTC-CCCBN_L001_R1.fastq.gz

CP1802v337_ATTCTC-CCCBN_L001_R2.fastq.gz

SRR11429877

SRP254184

PRJNA615661

SAMN14464218

338

appendix_vermiformis

CP1802v338_CGAAGG-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v338_CGAAGG-CCCBN_L001_R1.fastq.gz

CP1802v338_CGAAGG-CCCBN_L001_R2.fastq.gz

SRR11429876

SRP254184

PRJNA615661

SAMN14464219

340

appendix_vermiformis

CP1802v340_AAAGTA-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v340_AAAGTA-CCCBN_L001_R1.fastq.gz

CP1802v340_AAAGTA-CCCBN_L001_R2.fastq.gz

SRR11429875

SRP254184

PRJNA615661

SAMN14464220

341

appendix_vermiformis

CP1802v341_TCAGCG-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v341_TCAGCG-CCCBN_L001_R1.fastq.gz

CP1802v341_TCAGCG-CCCBN_L001_R2.fastq.gz

SRR11429874

SRP254184

PRJNA615661

SAMN14464221

342

appendix_vermiformis

CP1802v342_AGGCGC-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v342_AGGCGC-CCCBN_L001_R1.fastq.gz

CP1802v342_AGGCGC-CCCBN_L001_R2.fastq.gz

SRR11429873

SRP254184

PRJNA615661

SAMN14464222

343

appendix_vermiformis

CP1802v343_AATCCG-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v343_AATCCG-CCCBN_L001_R1.fastq.gz

CP1802v343_AATCCG-CCCBN_L001_R2.fastq.gz

SRR11429871

SRP254184

PRJNA615661

SAMN14464223

344

appendix_vermiformis

CP1802v344_TGATGC-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v344_TGATGC-CCCBN_L001_R1.fastq.gz

CP1802v344_TGATGC-CCCBN_L001_R2.fastq.gz

SRR11429870

SRP254184

PRJNA615661

SAMN14464224

347

appendix_vermiformis

CP1802v347_GTGAAT-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v347_GTGAAT-CCCBN_L001_R1.fastq.gz

CP1802v347_GTGAAT-CCCBN_L001_R2.fastq.gz

SRR11429869

SRP254184

PRJNA615661

SAMN14464225

349

appendix_vermiformis

CP1802v349_TGTCGT-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v349_TGTCGT-CCCBN_L001_R1.fastq.gz

CP1802v349_TGTCGT-CCCBN_L001_R2.fastq.gz

SRR11429868

SRP254184

PRJNA615661

SAMN14464226

350

appendix_vermiformis

CP1802v350_CACTAA-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v350_CACTAA-CCCBN_L001_R1.fastq.gz

CP1802v350_CACTAA-CCCBN_L001_R2.fastq.gz

SRR11429867

SRP254184

PRJNA615661

SAMN14464227

352

appendix_vermiformis

CP1802v352_ACATTA-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v352_ACATTA-CCCBN_L001_R1.fastq.gz

CP1802v352_ACATTA-CCCBN_L001_R2.fastq.gz

SRR11429866

SRP254184

PRJNA615661

SAMN14464228

353

appendix_vermiformis

CP1802v353_GGGTCT-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v353_GGGTCT-CCCBN_L001_R1.fastq.gz

CP1802v353_GGGTCT-CCCBN_L001_R2.fastq.gz

SRR11429865

SRP254184

PRJNA615661

SAMN14464229

354

appendix_vermiformis

CP1802v354_CCAAGC-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v354_CCAAGC-CCCBN_L001_R1.fastq.gz

CP1802v354_CCAAGC-CCCBN_L001_R2.fastq.gz

SRR11429864

SRP254184

PRJNA615661

SAMN14464230

356

appendix_vermiformis

CP1802v356_CGTTAA-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v356_CGTTAA-CCCBN_L001_R1.fastq.gz

CP1802v356_CGTTAA-CCCBN_L001_R2.fastq.gz

SRR11429863

SRP254184

PRJNA615661

SAMN14464231

357

appendix_vermiformis

CP1802v357_GTGTAG-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v357_GTGTAG-CCCBN_L001_R1.fastq.gz

CP1802v357_GTGTAG-CCCBN_L001_R2.fastq.gz

SRR11429862

SRP254184

PRJNA615661

SAMN14464232

358

appendix_vermiformis

CP1802v358_CACCTC-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v358_CACCTC-CCCBN_L001_R1.fastq.gz

CP1802v358_CACCTC-CCCBN_L001_R2.fastq.gz

SRR11429860

SRP254184

PRJNA615661

SAMN14464233

359

appendix_vermiformis

CP1802v359_TAAATG-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v359_TAAATG-CCCBN_L001_R1.fastq.gz

CP1802v359_TAAATG-CCCBN_L001_R2.fastq.gz

SRR11429859

SRP254184

PRJNA615661

SAMN14464234

360

appendix_vermiformis

CP1802v360_CTTGAC-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v360_CTTGAC-CCCBN_L001_R1.fastq.gz

CP1802v360_CTTGAC-CCCBN_L001_R2.fastq.gz

SRR11429858

SRP254184

PRJNA615661

SAMN14464235

362

appendix_vermiformis

CP1802v362_AAGTAA-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v362_AAGTAA-CCCBN_L001_R1.fastq.gz

CP1802v362_AAGTAA-CCCBN_L001_R2.fastq.gz

SRR11429857

SRP254184

PRJNA615661

SAMN14464236

364

appendix_vermiformis

CP1802v364_AGAATC-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v364_AGAATC-CCCBN_L001_R1.fastq.gz

CP1802v364_AGAATC-CCCBN_L001_R2.fastq.gz

SRR11429856

SRP254184

PRJNA615661

SAMN14464237

366

appendix_vermiformis

CP1802v366_CGGAAC-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v366_CGGAAC-CCCBN_L001_R1.fastq.gz

CP1802v366_CGGAAC-CCCBN_L001_R2.fastq.gz

SRR11429855

SRP254184

PRJNA615661

SAMN14464238

367

appendix_vermiformis

CP1802v367_ATTTGT-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v367_ATTTGT-CCCBN_L001_R1.fastq.gz

CP1802v367_ATTTGT-CCCBN_L001_R2.fastq.gz

SRR11429854

SRP254184

PRJNA615661

SAMN14464239

368

appendix_vermiformis

CP1802v368_GCCCAC-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v368_GCCCAC-CCCBN_L001_R1.fastq.gz

CP1802v368_GCCCAC-CCCBN_L001_R2.fastq.gz

SRR11429853

SRP254184

PRJNA615661

SAMN14464240

369

appendix_vermiformis

CP1802v369_AACCAT-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v369_AACCAT-CCCBN_L001_R1.fastq.gz

CP1802v369_AACCAT-CCCBN_L001_R2.fastq.gz

SRR11429852

SRP254184

PRJNA615661

SAMN14464241

370

appendix_vermiformis

CP1802v370_GGGGGA-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v370_GGGGGA-CCCBN_L001_R1.fastq.gz

CP1802v370_GGGGGA-CCCBN_L001_R2.fastq.gz

SRR11429851

SRP254184

PRJNA615661

SAMN14464242

371

appendix_vermiformis

CP1802v371_TAGTAC-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v371_TAGTAC-CCCBN_L001_R1.fastq.gz

CP1802v371_TAGTAC-CCCBN_L001_R2.fastq.gz

SRR11429848

SRP254184

PRJNA615661

SAMN14464243

372

appendix_vermiformis

CP1802v372_GTTCTT-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v372_GTTCTT-CCCBN_L001_R1.fastq.gz

CP1802v372_GTTCTT-CCCBN_L001_R2.fastq.gz

SRR11429847

SRP254184

PRJNA615661

SAMN14464244

373

appendix_vermiformis

CP1802v373_ACAGAC-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v373_ACAGAC-CCCBN_L001_R1.fastq.gz

CP1802v373_ACAGAC-CCCBN_L001_R2.fastq.gz

SRR11429846

SRP254184

PRJNA615661

SAMN14464245

374

appendix_vermiformis

CP1802v374_GTTGCG-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v374_GTTGCG-CCCBN_L001_R1.fastq.gz

CP1802v374_GTTGCG-CCCBN_L001_R2.fastq.gz

SRR11429845

SRP254184

PRJNA615661

SAMN14464246

375

appendix_vermiformis

CP1802v375_AAACTC-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v375_AAACTC-CCCBN_L001_R1.fastq.gz

CP1802v375_AAACTC-CCCBN_L001_R2.fastq.gz

SRR11429844

SRP254184

PRJNA615661

SAMN14464247

377

appendix_vermiformis

CP1802v377_TCTTAA-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v377_TCTTAA-CCCBN_L001_R1.fastq.gz

CP1802v377_TCTTAA-CCCBN_L001_R2.fastq.gz

SRR11429843

SRP254184

PRJNA615661

SAMN14464248

378

appendix_vermiformis

CP1802v378_CGCGTG-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v378_CGCGTG-CCCBN_L001_R1.fastq.gz

CP1802v378_CGCGTG-CCCBN_L001_R2.fastq.gz

SRR11429842

SRP254184

PRJNA615661

SAMN14464249

380

appendix_vermiformis

CP1802v380_AAGGCC-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v380_AAGGCC-CCCBN_L001_R1.fastq.gz

CP1802v380_AAGGCC-CCCBN_L001_R2.fastq.gz

SRR11429841

SRP254184

PRJNA615661

SAMN14464250

381

appendix_vermiformis

CP1802v381_TGCACG-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v381_TGCACG-CCCBN_L001_R1.fastq.gz

CP1802v381_TGCACG-CCCBN_L001_R2.fastq.gz

SRR11429840

SRP254184

PRJNA615661

SAMN14464251

382

appendix_vermiformis

CP1802v382_CAGTGA-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v382_CAGTGA-CCCBN_L001_R1.fastq.gz

CP1802v382_CAGTGA-CCCBN_L001_R2.fastq.gz

SRR11429839

SRP254184

PRJNA615661

SAMN14464252

383

appendix_vermiformis

CP1802v383_GCCGGT-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v383_GCCGGT-CCCBN_L001_R1.fastq.gz

CP1802v383_GCCGGT-CCCBN_L001_R2.fastq.gz

SRR11429837

SRP254184

PRJNA615661

SAMN14464253

384

appendix_vermiformis

CP1802v384_CTTAAA-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v384_CTTAAA-CCCBN_L001_R1.fastq.gz

CP1802v384_CTTAAA-CCCBN_L001_R2.fastq.gz

SRR11429836

SRP254184

PRJNA615661

SAMN14464254

387

appendix_vermiformis

CP1802v387_GAGCAA-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v387_GAGCAA-CCCBN_L001_R1.fastq.gz

CP1802v387_GAGCAA-CCCBN_L001_R2.fastq.gz

SRR11429835

SRP254184

PRJNA615661

SAMN14464255

389

appendix_vermiformis

CP1802v389_GGCCTC-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v389_GGCCTC-CCCBN_L001_R1.fastq.gz

CP1802v389_GGCCTC-CCCBN_L001_R2.fastq.gz

SRR11429834

SRP254184

PRJNA615661

SAMN14464256

390

appendix_vermiformis

CP1802v390_ATCGGG-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v390_ATCGGG-CCCBN_L001_R1.fastq.gz

CP1802v390_ATCGGG-CCCBN_L001_R2.fastq.gz

SRR11429833

SRP254184

PRJNA615661

SAMN14464257

392

appendix_vermiformis

CP1802v392_TACTCA-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v392_TACTCA-CCCBN_L001_R1.fastq.gz

CP1802v392_TACTCA-CCCBN_L001_R2.fastq.gz

SRR11429832

SRP254184

PRJNA615661

SAMN14464258

393

appendix_vermiformis

CP1802v393_ATAACG-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v393_ATAACG-CCCBN_L001_R1.fastq.gz

CP1802v393_ATAACG-CCCBN_L001_R2.fastq.gz

SRR11429831

SRP254184

PRJNA615661

SAMN14464259

394

appendix_vermiformis

CP1802v394_GAGGGC-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v394_GAGGGC-CCCBN_L001_R1.fastq.gz

CP1802v394_GAGGGC-CCCBN_L001_R2.fastq.gz

SRR11429994

SRP254184

PRJNA615661

SAMN14464260

396

appendix_vermiformis

CP1802v396_CGTTTC-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v396_CGTTTC-CCCBN_L001_R1.fastq.gz

CP1802v396_CGTTTC-CCCBN_L001_R2.fastq.gz

SRR11429993

SRP254184

PRJNA615661

SAMN14464261

397

appendix_vermiformis

CP1802v397_CCCGTT-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v397_CCCGTT-CCCBN_L001_R1.fastq.gz

CP1802v397_CCCGTT-CCCBN_L001_R2.fastq.gz

SRR11429992

SRP254184

PRJNA615661

SAMN14464262

398

appendix_vermiformis

CP1802v398_GGTCAC-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v398_GGTCAC-CCCBN_L001_R1.fastq.gz

CP1802v398_GGTCAC-CCCBN_L001_R2.fastq.gz

SRR11429990

SRP254184

PRJNA615661

SAMN14464263

399

appendix_vermiformis

CP1802v399_AGTGCT-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v399_AGTGCT-CCCBN_L001_R1.fastq.gz

CP1802v399_AGTGCT-CCCBN_L001_R2.fastq.gz

SRR11429989

SRP254184

PRJNA615661

SAMN14464264

400

appendix_vermiformis

CP1802v400_GACATC-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v400_GACATC-CCCBN_L001_R1.fastq.gz

CP1802v400_GACATC-CCCBN_L001_R2.fastq.gz

SRR11429988

SRP254184

PRJNA615661

SAMN14464265

402

appendix_vermiformis

CP1802v402_CTCGGT-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v402_CTCGGT-CCCBN_L001_R1.fastq.gz

CP1802v402_CTCGGT-CCCBN_L001_R2.fastq.gz

SRR11429987

SRP254184

PRJNA615661

SAMN14464266

404

appendix_vermiformis

CP1802v404_GTGTTT-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v404_GTGTTT-CCCBN_L001_R1.fastq.gz

CP1802v404_GTGTTT-CCCBN_L001_R2.fastq.gz

SRR11429986

SRP254184

PRJNA615661

SAMN14464267

406

appendix_vermiformis

CP1802v406_ACTTTT-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v406_ACTTTT-CCCBN_L001_R1.fastq.gz

CP1802v406_ACTTTT-CCCBN_L001_R2.fastq.gz

SRR11429985

SRP254184

PRJNA615661

SAMN14464268

407

appendix_vermiformis

CP1802v407_GGCCAA-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v407_GGCCAA-CCCBN_L001_R1.fastq.gz

CP1802v407_GGCCAA-CCCBN_L001_R2.fastq.gz

SRR11429984

SRP254184

PRJNA615661

SAMN14464269

408

appendix_vermiformis

CP1802v408_GACAGT-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v408_GACAGT-CCCBN_L001_R1.fastq.gz

CP1802v408_GACAGT-CCCBN_L001_R2.fastq.gz

SRR11429983

SRP254184

PRJNA615661

SAMN14464270

409

appendix_vermiformis

CP1802v409_ATGTCA-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v409_ATGTCA-CCCBN_L001_R1.fastq.gz

CP1802v409_ATGTCA-CCCBN_L001_R2.fastq.gz

SRR11429982

SRP254184

PRJNA615661

SAMN14464271

410

appendix_vermiformis

CP1802v410_GCAGCT-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v410_GCAGCT-CCCBN_L001_R1.fastq.gz

CP1802v410_GCAGCT-CCCBN_L001_R2.fastq.gz

SRR11429981

SRP254184

PRJNA615661

SAMN14464272

411

appendix_vermiformis

CP1802v411_CGTCGC-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v411_CGTCGC-CCCBN_L001_R1.fastq.gz

CP1802v411_CGTCGC-CCCBN_L001_R2.fastq.gz

SRR11429979

SRP254184

PRJNA615661

SAMN14464273

412

appendix_vermiformis

CP1802v412_CGTTGG-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v412_CGTTGG-CCCBN_L001_R1.fastq.gz

CP1802v412_CGTTGG-CCCBN_L001_R2.fastq.gz

SRR11429978

SRP254184

PRJNA615661

SAMN14464274

413

appendix_vermiformis

CP1802v413_ACCAGG-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v413_ACCAGG-CCCBN_L001_R1.fastq.gz

CP1802v413_ACCAGG-CCCBN_L001_R2.fastq.gz

SRR11429977

SRP254184

PRJNA615661

SAMN14464275

414

appendix_vermiformis

CP1802v414_TGTGCC-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v414_TGTGCC-CCCBN_L001_R1.fastq.gz

CP1802v414_TGTGCC-CCCBN_L001_R2.fastq.gz

SRR11429976

SRP254184

PRJNA615661

SAMN14464276

415

appendix_vermiformis

CP1802v415_GGACTT-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v415_GGACTT-CCCBN_L001_R1.fastq.gz

CP1802v415_GGACTT-CCCBN_L001_R2.fastq.gz

SRR11429975

SRP254184

PRJNA615661

SAMN14464277

417

appendix_vermiformis

CP1802v417_CATCCT-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v417_CATCCT-CCCBN_L001_R1.fastq.gz

CP1802v417_CATCCT-CCCBN_L001_R2.fastq.gz

SRR11429974

SRP254184

PRJNA615661

SAMN14464278

418

appendix_vermiformis

CP1802v418_GTCGGC-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v418_GTCGGC-CCCBN_L001_R1.fastq.gz

CP1802v418_GTCGGC-CCCBN_L001_R2.fastq.gz

SRR11429973

SRP254184

PRJNA615661

SAMN14464279

420

appendix_vermiformis

CP1802v420_CAGCGT-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v420_CAGCGT-CCCBN_L001_R1.fastq.gz

CP1802v420_CAGCGT-CCCBN_L001_R2.fastq.gz

SRR11429972

SRP254184

PRJNA615661

SAMN14464280

421

appendix_vermiformis

CP1802v421_GGATCA-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v421_GGATCA-CCCBN_L001_R1.fastq.gz

CP1802v421_GGATCA-CCCBN_L001_R2.fastq.gz

SRR11429971

SRP254184

PRJNA615661

SAMN14464281

422

appendix_vermiformis

CP1802v422_CCCCAT-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v422_CCCCAT-CCCBN_L001_R1.fastq.gz

CP1802v422_CCCCAT-CCCBN_L001_R2.fastq.gz

SRR11429970

SRP254184

PRJNA615661

SAMN14464282

423

appendix_vermiformis

CP1802v423_TTGTGA-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v423_TTGTGA-CCCBN_L001_R1.fastq.gz

CP1802v423_TTGTGA-CCCBN_L001_R2.fastq.gz

SRR11429968

SRP254184

PRJNA615661

SAMN14464283

424

appendix_vermiformis

CP1802v424_AGATAG-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v424_AGATAG-CCCBN_L001_R1.fastq.gz

CP1802v424_AGATAG-CCCBN_L001_R2.fastq.gz

SRR11429967

SRP254184

PRJNA615661

SAMN14464284

427

appendix_vermiformis

CP1802v427_ATTAGG-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v427_ATTAGG-CCCBN_L001_R1.fastq.gz

CP1802v427_ATTAGG-CCCBN_L001_R2.fastq.gz

SRR11429966

SRP254184

PRJNA615661

SAMN14464285

429

appendix_vermiformis

CP1802v429_AAAGCG-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v429_AAAGCG-CCCBN_L001_R1.fastq.gz

CP1802v429_AAAGCG-CCCBN_L001_R2.fastq.gz

SRR11429965

SRP254184

PRJNA615661

SAMN14464286

430

appendix_vermiformis

CP1802v430_TTGCTA-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v430_TTGCTA-CCCBN_L001_R1.fastq.gz

CP1802v430_TTGCTA-CCCBN_L001_R2.fastq.gz

SRR11429964

SRP254184

PRJNA615661

SAMN14464287

432

appendix_vermiformis

CP1802v432_CTACTA-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v432_CTACTA-CCCBN_L001_R1.fastq.gz

CP1802v432_CTACTA-CCCBN_L001_R2.fastq.gz

SRR11429963

SRP254184

PRJNA615661

SAMN14464288

433

appendix_vermiformis

CP1802v433_TGCGCT-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v433_TGCGCT-CCCBN_L001_R1.fastq.gz

CP1802v433_TGCGCT-CCCBN_L001_R2.fastq.gz

SRR11429962

SRP254184

PRJNA615661

SAMN14464289

434

appendix_vermiformis

CP1802v434_ACGATC-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v434_ACGATC-CCCBN_L001_R1.fastq.gz

CP1802v434_ACGATC-CCCBN_L001_R2.fastq.gz

SRR11429961

SRP254184

PRJNA615661

SAMN14464290

436

appendix_vermiformis

CP1802v436_GATAGA-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v436_GATAGA-CCCBN_L001_R1.fastq.gz

CP1802v436_GATAGA-CCCBN_L001_R2.fastq.gz

SRR11429960

SRP254184

PRJNA615661

SAMN14464291

437

appendix_vermiformis

CP1802v437_TATCAT-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v437_TATCAT-CCCBN_L001_R1.fastq.gz

CP1802v437_TATCAT-CCCBN_L001_R2.fastq.gz

SRR11429959

SRP254184

PRJNA615661

SAMN14464292

438

appendix_vermiformis

CP1802v438_CTAGTC-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v438_CTAGTC-CCCBN_L001_R1.fastq.gz

CP1802v438_CTAGTC-CCCBN_L001_R2.fastq.gz

SRR11429957

SRP254184

PRJNA615661

SAMN14464293

439

appendix_vermiformis

CP1802v439_GGCTTG-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v439_GGCTTG-CCCBN_L001_R1.fastq.gz

CP1802v439_GGCTTG-CCCBN_L001_R2.fastq.gz

SRR11429956

SRP254184

PRJNA615661

SAMN14464294

440

appendix_vermiformis

CP1802v440_CCTCCC-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v440_CCTCCC-CCCBN_L001_R1.fastq.gz

CP1802v440_CCTCCC-CCCBN_L001_R2.fastq.gz

SRR11429955

SRP254184

PRJNA615661

SAMN14464295

442

appendix_vermiformis

CP1802v442_AGGGCA-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v442_AGGGCA-CCCBN_L001_R1.fastq.gz

CP1802v442_AGGGCA-CCCBN_L001_R2.fastq.gz

SRR11429954

SRP254184

PRJNA615661

SAMN14464296

444

appendix_vermiformis

CP1802v444_GATCTG-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v444_GATCTG-CCCBN_L001_R1.fastq.gz

CP1802v444_GATCTG-CCCBN_L001_R2.fastq.gz

SRR11429953

SRP254184

PRJNA615661

SAMN14464297

446

appendix_vermiformis

CP1802v446_GCCGCG-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v446_GCCGCG-CCCBN_L001_R1.fastq.gz

CP1802v446_GCCGCG-CCCBN_L001_R2.fastq.gz

SRR11429952

SRP254184

PRJNA615661

SAMN14464298

447

appendix_vermiformis

CP1802v447_TAGGAA-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v447_TAGGAA-CCCBN_L001_R1.fastq.gz

CP1802v447_TAGGAA-CCCBN_L001_R2.fastq.gz

SRR11429951

SRP254184

PRJNA615661

SAMN14464299

448

appendix_vermiformis

CP1802v448_TATCGA-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v448_TATCGA-CCCBN_L001_R1.fastq.gz

CP1802v448_TATCGA-CCCBN_L001_R2.fastq.gz

SRR11429950

SRP254184

PRJNA615661

SAMN14464300

449

appendix_vermiformis

CP1802v449_TCGAGG-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v449_TCGAGG-CCCBN_L001_R1.fastq.gz

CP1802v449_TCGAGG-CCCBN_L001_R2.fastq.gz

SRR11429949

SRP254184

PRJNA615661

SAMN14464301

450

appendix_vermiformis

CP1802v450_CGATAC-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v450_CGATAC-CCCBN_L001_R1.fastq.gz

CP1802v450_CGATAC-CCCBN_L001_R2.fastq.gz

SRR11429948

SRP254184

PRJNA615661

SAMN14464302

451

appendix_vermiformis

CP1802v451_TGGTCA-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v451_TGGTCA-CCCBN_L001_R1.fastq.gz

CP1802v451_TGGTCA-CCCBN_L001_R2.fastq.gz

SRR11429946

SRP254184

PRJNA615661

SAMN14464303

452

appendix_vermiformis

CP1802v452_CACCGG-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v452_CACCGG-CCCBN_L001_R1.fastq.gz

CP1802v452_CACCGG-CCCBN_L001_R2.fastq.gz

SRR11429945

SRP254184

PRJNA615661

SAMN14464304

453

appendix_vermiformis

CP1802v453_TCATGT-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v453_TCATGT-CCCBN_L001_R1.fastq.gz

CP1802v453_TCATGT-CCCBN_L001_R2.fastq.gz

SRR11429944

SRP254184

PRJNA615661

SAMN14464305

454

appendix_vermiformis

CP1802v454_TCTCTC-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v454_TCTCTC-CCCBN_L001_R1.fastq.gz

CP1802v454_TCTCTC-CCCBN_L001_R2.fastq.gz

SRR11429943

SRP254184

PRJNA615661

SAMN14464306

455

appendix_vermiformis

CP1802v455_GTAGTT-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v455_GTAGTT-CCCBN_L001_R1.fastq.gz

CP1802v455_GTAGTT-CCCBN_L001_R2.fastq.gz

SRR11429942

SRP254184

PRJNA615661

SAMN14464307

457

appendix_vermiformis

CP1802v457_AACCGA-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v457_AACCGA-CCCBN_L001_R1.fastq.gz

CP1802v457_AACCGA-CCCBN_L001_R2.fastq.gz

SRR11429941

SRP254184

PRJNA615661

SAMN14464308

458

appendix_vermiformis

CP1802v458_GGCAAT-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v458_GGCAAT-CCCBN_L001_R1.fastq.gz

CP1802v458_GGCAAT-CCCBN_L001_R2.fastq.gz

SRR11429940

SRP254184

PRJNA615661

SAMN14464309

460

appendix_vermiformis

CP1802v460_CTCATA-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v460_CTCATA-CCCBN_L001_R1.fastq.gz

CP1802v460_CTCATA-CCCBN_L001_R2.fastq.gz

SRR11429939

SRP254184

PRJNA615661

SAMN14464310

461

appendix_vermiformis

CP1802v461_GAGTTG-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v461_GAGTTG-CCCBN_L001_R1.fastq.gz

CP1802v461_GAGTTG-CCCBN_L001_R2.fastq.gz

SRR11429938

SRP254184

PRJNA615661

SAMN14464311

463

appendix_vermiformis

CP1802v463_AATTCT-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v463_AATTCT-CCCBN_L001_R1.fastq.gz

CP1802v463_AATTCT-CCCBN_L001_R2.fastq.gz

SRR11429937

SRP254184

PRJNA615661

SAMN14464312

465

appendix_vermiformis

CP1802v465_CTAGGA-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v465_CTAGGA-CCCBN_L001_R1.fastq.gz

CP1802v465_CTAGGA-CCCBN_L001_R2.fastq.gz

SRR11429935

SRP254184

PRJNA615661

SAMN14464313

466

appendix_vermiformis

CP1802v466_TGACCT-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v466_TGACCT-CCCBN_L001_R1.fastq.gz

CP1802v466_TGACCT-CCCBN_L001_R2.fastq.gz

SRR11429934

SRP254184

PRJNA615661

SAMN14464314

467

appendix_vermiformis

CP1802v467_CAGTTC-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v467_CAGTTC-CCCBN_L001_R1.fastq.gz

CP1802v467_CAGTTC-CCCBN_L001_R2.fastq.gz

SRR11429933

SRP254184

PRJNA615661

SAMN14464315

468

appendix_vermiformis

CP1802v468_TGCAGT-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v468_TGCAGT-CCCBN_L001_R1.fastq.gz

CP1802v468_TGCAGT-CCCBN_L001_R2.fastq.gz

SRR11429932

SRP254184

PRJNA615661

SAMN14464316

469

appendix_vermiformis

CP1802v469_AATGAA-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v469_AATGAA-CCCBN_L001_R1.fastq.gz

CP1802v469_AATGAA-CCCBN_L001_R2.fastq.gz

SRR11429931

SRP254184

PRJNA615661

SAMN14464317

471

appendix_vermiformis

CP1802v471_CACTGT-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v471_CACTGT-CCCBN_L001_R1.fastq.gz

CP1802v471_CACTGT-CCCBN_L001_R2.fastq.gz

SRR11429830

SRP254184

PRJNA615661

SAMN14464318

472

appendix_vermiformis

CP1802v472_GTGCCA-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v472_GTGCCA-CCCBN_L001_R1.fastq.gz

CP1802v472_GTGCCA-CCCBN_L001_R2.fastq.gz

SRR11429829

SRP254184

PRJNA615661

SAMN14464319

474

appendix_vermiformis

CP1802v474_GTGACG-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v474_GTGACG-CCCBN_L001_R1.fastq.gz

CP1802v474_GTGACG-CCCBN_L001_R2.fastq.gz

SRR11429828

SRP254184

PRJNA615661

SAMN14464320

475

appendix_vermiformis

CP1802v475_GGTCCG-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v475_GGTCCG-CCCBN_L001_R1.fastq.gz

CP1802v475_GGTCCG-CCCBN_L001_R2.fastq.gz

SRR11429827

SRP254184

PRJNA615661

SAMN14464321

476

appendix_vermiformis

CP1802v476_AACTTA-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v476_AACTTA-CCCBN_L001_R1.fastq.gz

CP1802v476_AACTTA-CCCBN_L001_R2.fastq.gz

SRR11429826

SRP254184

PRJNA615661

SAMN14464322

478

appendix_vermiformis

CP1802v478_CAACGA-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v478_CAACGA-CCCBN_L001_R1.fastq.gz

CP1802v478_CAACGA-CCCBN_L001_R2.fastq.gz

SRR11429824

SRP254184

PRJNA615661

SAMN14464323

479

appendix_vermiformis

CP1802v479_AAGGTG-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v479_AAGGTG-CCCBN_L001_R1.fastq.gz

CP1802v479_AAGGTG-CCCBN_L001_R2.fastq.gz

SRR11429823

SRP254184

PRJNA615661

SAMN14464324

480

appendix_vermiformis

CP1802v480_TTCAAC-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v480_TTCAAC-CCCBN_L001_R1.fastq.gz

CP1802v480_TTCAAC-CCCBN_L001_R2.fastq.gz

SRR11429822

SRP254184

PRJNA615661

SAMN14464325

481

appendix_vermiformis

CP1802v481_ACGAAT-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v481_ACGAAT-CCCBN_L001_R1.fastq.gz

CP1802v481_ACGAAT-CCCBN_L001_R2.fastq.gz

SRR11429821

SRP254184

PRJNA615661

SAMN14464326

482

appendix_vermiformis

CP1802v482_GGATTC-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v482_GGATTC-CCCBN_L001_R1.fastq.gz

CP1802v482_GGATTC-CCCBN_L001_R2.fastq.gz

SRR11429820

SRP254184

PRJNA615661

SAMN14464327

483

appendix_vermiformis

CP1802v483_CAGGAC-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v483_CAGGAC-CCCBN_L001_R1.fastq.gz

CP1802v483_CAGGAC-CCCBN_L001_R2.fastq.gz

SRR11429819

SRP254184

PRJNA615661

SAMN14464328

484

appendix_vermiformis

CP1802v484_GCATGG-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v484_GCATGG-CCCBN_L001_R1.fastq.gz

CP1802v484_GCATGG-CCCBN_L001_R2.fastq.gz

SRR11429818

SRP254184

PRJNA615661

SAMN14464329

485

appendix_vermiformis

CP1802v485_CTGCAC-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v485_CTGCAC-CCCBN_L001_R1.fastq.gz

CP1802v485_CTGCAC-CCCBN_L001_R2.fastq.gz

SRR11429817

SRP254184

PRJNA615661

SAMN14464330

486

appendix_vermiformis

CP1802v486_TTTCCG-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v486_TTTCCG-CCCBN_L001_R1.fastq.gz

CP1802v486_TTTCCG-CCCBN_L001_R2.fastq.gz

SRR11429816

SRP254184

PRJNA615661

SAMN14464331

488

appendix_vermiformis

CP1802v488_AATGGT-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v488_AATGGT-CCCBN_L001_R1.fastq.gz

CP1802v488_AATGGT-CCCBN_L001_R2.fastq.gz

SRR11429815

SRP254184

PRJNA615661

SAMN14464332

489

appendix_vermiformis

CP1802v489_GTAACA-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v489_GTAACA-CCCBN_L001_R1.fastq.gz

CP1802v489_GTAACA-CCCBN_L001_R2.fastq.gz

SRR11429813

SRP254184

PRJNA615661

SAMN14464333

491

appendix_vermiformis

CP1802v491_CAGGCG-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v491_CAGGCG-CCCBN_L001_R1.fastq.gz

CP1802v491_CAGGCG-CCCBN_L001_R2.fastq.gz

SRR11429812

SRP254184

PRJNA615661

SAMN14464334

493

appendix_vermiformis

CP1802v493_ACGGTA-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v493_ACGGTA-CCCBN_L001_R1.fastq.gz

CP1802v493_ACGGTA-CCCBN_L001_R2.fastq.gz

SRR11429811

SRP254184

PRJNA615661

SAMN14464335

494

appendix_vermiformis

CP1802v494_ACACCG-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v494_ACACCG-CCCBN_L001_R1.fastq.gz

CP1802v494_ACACCG-CCCBN_L001_R2.fastq.gz

SRR11429810

SRP254184

PRJNA615661

SAMN14464336

495

appendix_vermiformis

CP1802v495_AGTATT-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v495_AGTATT-CCCBN_L001_R1.fastq.gz

CP1802v495_AGTATT-CCCBN_L001_R2.fastq.gz

SRR11429809

SRP254184

PRJNA615661

SAMN14464337

499

appendix_vermiformis

CP1802v499_CCGGGT-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v499_CCGGGT-CCCBN_L001_R1.fastq.gz

CP1802v499_CCGGGT-CCCBN_L001_R2.fastq.gz

SRR11429808

SRP254184

PRJNA615661

SAMN14464338

500

appendix_vermiformis

CP1802v500_GTCATT-C

16S rDNA caecum

AMPLICON

METAGENOMIC

PCR

paired

ILLUMINA

Illumina MiSeq

PCR of V3-V4 DNA16S region

fastq

CP1802v500_GTCATT-CCCBN_L001_R1.fastq.gz

CP1802v500_GTCATT-CCCBN_L001_R2.fastq.gz