Table 2 Statistics and evaluation of the genome assemblies of monoploid and two haploids.

From: Chromosome-level genome assembly of Plagiognathops microlepis based on PacBio HiFi and Hi-C sequencing

 

Genome

Haploid A

Haploid B

Total length (bp)

1,004,342,920

997,689,109

995,239,663

GC content (%)

37.46

37.45

37.44

Contig number

35

55

48

Contig N50 (bp)

38,802,614

36,213,105

33,971,167

Contig N90 (bp)

31,324,152

13,102,075

15,549,623

Average contig length (bp)

28,695,512

18,139,801.98

20,734,159.65

Maximum contig length (bp)

56,589,079

51,287,089

53,510,343

Scaffold number

29

33

32

Scaffold N50 (bp)

39,984,115

39,350,168

38,591,496

Scaffold N90 (bp)

33,350,185

33,143,256

33,199,758

Average scaffold length (bp)

34,632,535.17

30,233,069.97

31,101,289.47

Maximum scaffold length (bp)

70,153,910

70,172,539

71,079,337

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