Table 4 Summary of the transposable elements in P. microlepis genome.
Type | TE protiens | De novo + repbase | Combined TEs | |||
|---|---|---|---|---|---|---|
Length (bp) | % in genome | Length (bp) | % in genome | Length (bp) | % in genome | |
DNA | 21,246,360 | 2.12 | 314,296,414 | 31.29 | 316,891,032 | 31.55 |
LINE | 16,746,855 | 1.67 | 31,837,184 | 3.17 | 34,416,502 | 3.43 |
SINE | 0 | 0 | 1,574,247 | 0.16 | 1,574,247 | 0.16 |
LTR | 25,129,588 | 2.5 | 114,807,756 | 11.43 | 117,670,364 | 11.72 |
Satellite | 0 | 0 | 6,563,915 | 0.65 | 6,563,915 | 0.65 |
Simple repeat | 0 | 0 | 2,058,194 | 0.2 | 2,058,194 | 0.2 |
Other | 0 | 0 | 5,172 | 0 | 5,172 | 0 |
Unknown | 2,040 | 0 | 121,082,123 | 12.06 | 121,084,163 | 12.06 |
Total | 63,103,527 | 6.28 | 559,942,334 | 55.75 | 578,905,265 | 57.64 |
