Table 8 The characteristic of predicted centromeres.
Chr | Start position / bp | End position / bp | Length | Repetitive sequence percentage | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
Tandem repeat | Interspersed repeat | ||||||||||
Total | LTR/Gypsy | LTR/Copia | LINE | SINE | DNA | †Unclassified | |||||
Chr01 | 34,928,863 | 40,321,337 | 5,392,475 | 50.46 | 98.35 | 62.88 | 8.90 | 0.06 | 0.00 | 1.13 | 35.85 |
Chr02 | 25,957,327 | 38,958,868 | 13,001,542 | 19.52 | 95.07 | 71.69 | 12.30 | 0.57 | 0.00 | 3.82 | 11.93 |
Chr03 | 33,253,963 | 43,005,316 | 9,751,354 | 52.58 | 98.54 | 54.85 | 11.27 | 0.09 | 0.00 | 4.09 | 36.86 |
Chr04 | 28,116,367 | 35,694,187 | 7,577,821 | 51.22 | 97.75 | 58.00 | 7.64 | 0.44 | 0.00 | 1.42 | 38.89 |
Chr05 | 31,489,790 | 40,675,439 | 9,185,650 | 45.85 | 98.08 | 64.60 | 8.48 | 0.07 | 0.08 | 1.13 | 30.64 |
Chr06 | 22,061,995 | 28,582,296 | 6,520,302 | 67.15 | 99.13 | 44.03 | 10.54 | 0.01 | 0.00 | 0.12 | 56.41 |
Chr07 | 33,906,883 | 38,220,429 | 4,313,547 | 68.07 | 97.94 | 43.62 | 5.32 | 0.01 | 0.00 | 0.25 | 53.55 |
Chr08 | 25,494,256 | 32,886,453 | 7,392,198 | 57.78 | 98.97 | 55.28 | 5.96 | 0.00 | 0.00 | 0.44 | 46.12 |
Chr09 | 28,090,934 | 35,539,312 | 7,448,379 | 67.32 | 98.36 | 46.95 | 6.39 | 0.03 | 0.00 | 0.50 | 51.23 |
Chr10 | 25,626,568 | 34,864,952 | 9,238,385 | 42.31 | 97.82 | 62.67 | 6.51 | 0.17 | 0.00 | 2.18 | 31.44 |
