Table 5 Statistics of repeat elements in Episyrphus balteatus genome.
From: Chromosome-level genome assembly of marmalade hoverfly Episyrphus balteatus (Diptera: Syrphidae)
Repeat types | Number | Length (bp) | Percent (%) | ||
|---|---|---|---|---|---|
Retroelement | LINE | 54,895 | 14,584,724 | 2.82 | 13.90 |
SINE | 3,591 | 393,983 | 0.08 | ||
LTR/Copia | 19,081 | 5,602,513 | 1.08 | ||
LTR/ERV | 473 | 28,346 | 0.01 | ||
LTR/Gypsy | 104,641 | 37,687,552 | 7.28 | ||
LTR/Ngaro | 146 | 13,894 | 2.56E-3 | ||
LTR/Pao | 771 | 165,882 | 0.03 | ||
LTR/Unknown | 62,749 | 13,523,276 | 2.61 | ||
DNA transposon | Academ | 2,404 | 556,953 | 0.11 | 21.33 |
CACTA | 4,146 | 924,985 | 0.18 | ||
Crypton | 5 | 255 | 4.70E-3 | ||
Dada | 68 | 3,455 | 6.36E-3 | ||
Ginger | 70 | 7,498 | 1.38E-3 | ||
Helitron | 82,587 | 13,068,574 | 2.52 | ||
IS3EU | 14 | 978 | 1.80E-4 | ||
Kolobok | 53 | 7,132 | 1.31E-3 | ||
Maverick | 176 | 240,051 | 0.05 | ||
Merlin | 18 | 1,217 | 2.24E-4 | ||
Mutator | 1,229 | 152,024 | 0.03 | ||
P | 237 | 26,204 | 0.01 | ||
PIF-Harbinger | 593 | 103,241 | 0.02 | ||
PiggyBac | 1,473 | 475,840 | 0.09 | ||
Sola | 6 | 318 | 5.86E-5 | ||
Tc1-Mariner | 19,996 | 7,392,204 | 1.43 | ||
Unknown | 336,237 | 85,796,409 | 16.57 | ||
Zisupton | 24 | 1,660 | 3.06E-4 | ||
hAT | 6,419 | 1,700,529 | 0.33 | ||
Unknown | Unknown | 213 | 27,648 | 0.01 | 0.01 |
Tandem repeat | Microsatellite (1–9 bp units) | 532,332 | 11,416,388 | 2.20 | 8.31 |
Minisatellite (10–99 bp units) | 93,334 | 12,988,803 | 2.51 | ||
Satellite (> = 100 bp units) | 11,171 | 18,649,395 | 3.60 | ||
Total | 1,339,152 | 225,541,931 | 43.55 | ||
