Table 4 Genomic reference sequences used for DNA-to-DNA methods.

From: Benchmarking bacterial taxonomic classification using nanopore metagenomics data of several mock communities

Branch

Assembly level

Genomes

# Unique

Archaea

Complete Chromosome Scaffold

828

30 orders; 48 families; 160 genera; 563 species;

Bacteria

Complete

31559

193 orders; 474 families; 1754 genera; 8103 species;

Fungi

Complete Chromosome Scaffold

376

54 orders; 112 families; 192 genera; 369 species;

Protozoa

Complete Chromosome Scaffold

87

23 orders; 27 families; 36 genera; 86 species;

Viruses

Complete

11642

63 orders; 222 families; 1972 genera; 11096 species;

Other eukaryota (including human)

/

2

2 orders; 2 families; 2 genera; 2 species;

  1. The first column lists the taxon branch. The second column specifies the used NCBI filter for the assembly level. The third column lists the total number of genomes for a branch. The last column displays the unique number of taxonomic entries at the level of order, family, genus and species.
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