Table 3 Main data sources (Part II).

s(i/h)RNA

ICBP siRNA¹²⁸

HS, MM

147

HTML

no

P

mRNA

WR

147

DrugBank¹²⁷

4

rel

yes^S

P

mRNA

disease

WR

M

4

6

RNA aptamer

Apta-Index¹²⁹

230

rel

no

P

chemical

protein

M

M

77

153

DrugBank¹²⁷

2

rel/RDF

yes^S

P

protein

disease

M

M

5

6

ASO

eSkip-Finder¹³⁰

4

2,196

rel

no

P

mRNA

WR

11,778

DrugBank¹²⁷

12

rel/RDF

yes^S

P

protein

mRNA

disease

M

WR

M

12

7

14

gRNA

Addgene¹³¹

29

296

HTML

no

P

gene

WR

321

lncRNA

LncBook¹³²

HS

323,950

rel/CSV

no

validated

WR

miRNA

small protein

disease

bio. context

WR

WR

M

M

146,092,274

772,745

34,536

95,243

LncRNADisease¹³³

4

6,066

CSV

no

WR

disease

M

20,277

LncExpDB¹³⁴

HS

101,293

rel/CSV

no

p_val < 0.01

WR

mRNA

WR

28,443,865

dbEssLnc¹³⁵

HS, MM

207

JSON

no

WR

bio. role

bio. process

P

O

207

28

lncATLAS¹³⁶

HS

6,768

CSV

no

σ ≥ 28.50

WR

cell. component

M

2,429,368

NONCODE¹³⁷

39

644,510

rel

no

WR

disease

O

32,226

Lnc2Cancer¹³⁸

HS

3,402

CSV

no

WR

disease

O

9,254

LncRNAWiki¹³⁹

HS

106,063

rel/CSV

no

WR

small protein

disease bio.

context

cell. component

gene

miRNA

TF

bio. process

mol. function

chemical

pathway

P

M

M

M

WR

WR

M

M

M

M

M

9,387

7,634

18,453

4,969

509

210

232

10,806

1,800

789

571

LncBase¹⁴⁰

4

21,225

rel/CSV

no

σ₁ ≥ 0.7325

σ₂ ≥ 2.497

WR

miRNA

anatomy

cell

cell. component

WR

M

M

M

4,229,539

61,905

68,355

73,069

TANRIC¹⁴¹

HS

12,727

rel/CSV

no

σ ≥ 0.3

WR

disease

M

36,632

Ribozyme

Ribocentre¹⁴²

1,195

21,084

rel

no

P

bio. process

M

34

Rfam¹⁴³

16

35

rel

yes

P

bio. process

cell. component

mol. function

O

O

O

8

6

22

Riboswitch

TBDB¹⁴⁴

3,621

23,497

CSV

no

P

protein

M

23,535

RSwitch¹⁴⁵

50

215

rel/CSV

no

P

bact. strain

M

215

tRF & tsRNA

tRFdb¹⁴⁶

7

863

CSV

no

P

tRNA

cell

WR

M

792

2,292

tsRFun¹⁴⁷

HS

3,940

CSV

no

FDR < 0.01

P

miRNA

tRNA

disease

WR

WR

M

45,165

46,798

4,620

MINTbase¹⁴⁸

HS

28,824

CSV

no

P

tRNA

WR

125,285