Table 6 Bio-ontologies that can be exploited for the characterization of data sources (Part I).

From: An ontology-based knowledge graph for representing interactions involving RNA molecules

Type

Data source

GO

Mondo

HPO

VO

ChEBI

Uberon

CLO

PRO

SO

PW

miRNA

miRBase

x

       

x

 

miRDB

        

x

 

miRNet

 

x

x

 

x

  

x

x

 

miRecords

        

x

 

EpimiR

        

x

 

HMDD

 

x

x

     

x

 

miR2Disease

 

x

x

     

x

 

TargetScan

        

x

 

SomamiR

 

x

x

     

x

 

TarBase

        

x

 

miRTarBase

        

x

 

SM2miR

    

x

   

x

 

TransmiR

       

x

x

 

PolymiRTS

 

x

x

     

x

 

dbDEMC

 

x

x

     

x

 

TAM

x

x

x

  

x

 

x

x

 

PuTmiR

       

x

x

 

miRPathDB

x

       

x

x

miRCancer

 

x

x

     

x

 

miRdSNP

 

x

x

     

x

 

miRandola

x

   

x

   

x

 

mRNA vaccine

DrugBank

 

x

 

x

x

   

x

 

s(i/h)RNA

ICBP siRNA

        

x

 

DrugBank

 

x

  

x

   

x

 

RNA aptamer

Apta-Index

    

x

  

x

x

 

DrugBank

 

x

  

x

  

x

x

 

ASO

eSkip-Finder

        

x

 

DrugBank

 

x

  

x

  

x

x

 

gRNA

Addgene

        

x

 

lncRNA

LncBook

x

x

x

  

x

x

x

x

 

LncRNADisease

 

x

x

     

x

 

LncExpDB

        

x

 

dbEssLnc

x

   

x

   

x

 

lncATLAS

x

       

x

 

NONCODE

 

x

x

     

x

 

Lnc2Cancer

 

x

x

     

x

 

LncRNAWiki

x

x

  

x

  

x

x

x

LncBase

x

    

x

x

 

x

 

TANRIC

 

x

      

x

 
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