Table 2 Comparison of genome assemblies of L. sativa var. crispa, L. sativa var. capitata, L. sativa var. angustana, L. saligna, and L. virosa.
From: A near-complete chromosome-level genome assembly of looseleaf lettuce (Lactuca sativa var. crispa)
Feature | L. sativa var. crispa (this study) | L. sativa var. capitata8 | L. sativa var. angustana11 | L. saligna9 | L. virosa10 |
|---|---|---|---|---|---|
Number of contigs | 156 | 477 | 2053 | 43,198 | 136,206 |
Contig N50 | 205.47 Mb | 12.52 Mb | 4.71 Mb | 86.84 Kb | 135.89 Kb |
Longest contig | 282.47 Mb | 75.54 Mb | 20.98 Mb | 794 Kb | 1.02 Mb |
Total size of assembled contigs | 2.59 Gb | 2.59 Gb | 2.60 Gb | 2.03 Gb | 2.51 Gb |
Number of scaffolds | 77 | 93 | 649 | 10 | 5,855 |
Scaffold N50 | 320.76 Mb | 325 Mb | 332.3 Mb | 238.63 Mb | 316.91 Mb |
Longest scaffold | 407.16 Mb | 410.30 Mb | 397.86 Mb | 420.74 Mb | 422.78 Mb |
Total size of assembled scaffold | 2.59 Gb | 2.59 Gb | 2.62 Gb | 2.22 Gb | 3.45 Gb |
GC content | 37.96% | 37.92% | 37.91% | 37.68% | 38.00% |
Gap number | 11 | 384 | 1,404 | 43,188 | 130,351 |
