Table 6 The basal ganglia in the Allen Mouse Brain atlas Common Coordinate Framework version 3.

From: Comparison of basal ganglia regions across murine brain atlases using metadata models and the Waxholm Space

Basal ganglia in the Allen Mouse Brain atlas Common Coordinate Framework version 3

Abbreviation

Term

Edition specification

GPe

Globus pallidus, external segment

2015; 2016; 2017

GPi

Globus pallidus, internal segment

2015; 2016; 2017

SI

Substantia innominata

2017

STR

Striatum

2015; 2016; 2017

CP

Caudoputamen

2015; 2016; 2017

FS

Fundus of striatum

2017

ACB

Nucleus accumbens

2015; 2016; 2017

STN

Subthalamic nucleus

2015; 2016; 2017

SNc

Substantia nigra, compact part

2017

SNl

Substantia nigra, lateral part

*

SNr

Substantia nigra, reticular part

2015; 2016; 2017

VTA

Ventral tegmental area

2017

  1. Based on the Allen Brain Atlas (ABA) Adult Mouse Brain Ontology (https://bioportal.bioontology.org/ontologies/ABA-AMB) and white papers from 2015, 2016 and 2017. *The SNl is included in the nomenclature, but not provided as an annotation.