Table 2 The interspersed repeat content of the Argopecten irradians NY genome.
From: Chromosome-level genome assembly of the bay scallop Argopecten irradians
Element Type | Number of Elements | Length Occupied (bp) | Percentage of Sequence |
|---|---|---|---|
Retroelements | 111,065 | 45,503,269 | 5.43 |
SINEs: | 11,701 | 1,856,540 | 0.22 |
Penelope: | 0 | 0 | 0 |
LINEs: | 58,361 | 25,575,385 | 3.05 |
L2/CR1/Rex | 12,228 | 4,536,621 | 0.54 |
R1/LOA/Jockey | 5,537 | 4,754,207 | 0.57 |
R2/R4/NeSL | 2,796 | 1,345,314 | 0.16 |
RTE/Bov-B | 8,562 | 3,761,032 | 0.45 |
L1/CIN4 | 290 | 306,683 | 0.04 |
LTR elements: | 41,003 | 18,071,344 | 2.16 |
BEL/Pao | 439 | 604,652 | 0.07 |
Ty1/Copia | 857 | 245,407 | 0.03 |
Gypsy/DIRS1 | 10,155 | 11,459,235 | 1.37 |
Retroviral | 566 | 281,038 | 0.03 |
DNA transposons | 34,399 | 7,180,469 | 0.86 |
hobo-Activator | 2,584 | 714,065 | 0.09 |
Tc1-IS630-Pogo | 21,349 | 3,210,208 | 0.38 |
MULE-MuDR | 462 | 240,239 | 0.03 |
PiggyBac | 223 | 156,048 | 0.02 |
Tourist/Harbinger | 536 | 202,879 | 0.02 |
Other (Mirage, P-element, Transib) | 839 | 117,152 | 0.01 |
Rolling-circles | 6,338 | 647,513 | 0.08 |
Unclassified | 1,121,661 | 250,565,449 | 29.89 |
Total interspersed | 303,249,187 | 36.18 | |
Small RNA | 13,500 | 2,191,028 | 0.26 |
Satellites | 1,888 | 562,954 | 0.07 |
Simple repeats | 91,158 | 4,939,239 | 0.59 |
Low complexity | 17,427 | 851,457 | 0.1 |
