Table 6 Assembly summary in different steps when using the improved assembly pipeline.
Category | ContigV1 | Final assembly | ||||
|---|---|---|---|---|---|---|
ContigV2 | Scaffold | |||||
Length (bp) | Number | Length (bp) | Number | Length (bp) | Number | |
Total | 2,870,177,083 | 222 | 2,762,439,668 | 33 | 2,762,439,868 | 31 |
Average length | 12,928,725 | — | 83,710,292 | — | 89,110,963 | — |
Max length | 160,712,152 | — | 163,599,655 | — | 163,599,655 | — |
Length ≥200 bp | — | 222 | — | 33 | — | 31 |
N50 | 84,044,118 | 13 | 95,224,248 | 12 | 95,224,248 | 12 |
N60 | 74,677,375 | 17 | 91,085,198 | 15 | 91,085,198 | 15 |
N70 | 63,362,344 | 21 | 82,415,014 | 18 | 82,415,014 | 18 |
N80 | 46,635,812 | 26 | 72,404,257 | 21 | 72,404,257 | 21 |
N90 | 21,255,816 | 34 | 55,425,393 | 26 | 59,408,587 | 25 |
