Table 8 The summary of gene structure in the cashmere goat genome.
Gene set | Number | Average gene length (bp) | Average CDS length per gene (bp) | Average exon number per gene | Average exon length (bp) | Average intron length (bp) | |
|---|---|---|---|---|---|---|---|
De novo | Augustus | 26,671 | 21,111.70 | 1,151.23 | 5.65 | 203.88 | 4,295.70 |
GlimmerHMM | 966,504 | 2,583.26 | 461.08 | 2.17 | 212.41 | 1,812.71 | |
SNAP | 149,071 | 30,843.99 | 681.38 | 4.18 | 163.01 | 9,485.21 | |
GeneID | 33,714 | 33,731.69 | 1,110.44 | 5.99 | 185.49 | 6,541.87 | |
Genscan | 60,517 | 34,300.72 | 1,951.91 | 9.05 | 215.71 | 4,019.16 | |
Homolog | Btau | 87,021 | 7,102.68 | 736.89 | 3.17 | 232.72 | 2,938.34 |
Chir | 89,352 | 7,461.94 | 772.85 | 3.26 | 236.99 | 2,958.33 | |
Hsa | 24,072 | 22,817.02 | 1,388.77 | 7.07 | 196.51 | 3,531.91 | |
Mmu | 22,250 | 24,103.80 | 1,457.25 | 7.39 | 197.13 | 3,542.83 | |
Oari | 42,751 | 20,119.77 | 1,011.73 | 4.82 | 209.89 | 5,001.67 | |
RNA-seq | PASA | 110,022 | 25,355.54 | 1,217.65 | 7.25 | 168.04 | 3,864.43 |
Cufflinks | 59,866 | 46,060.72 | 4,029.26 | 9.41 | 428.03 | 4,995.77 | |
EVM | 33,766 | 27,128.96 | 1,225.08 | 6.40 | 191.54 | 4,800.61 | |
PASA-update | 33,650 | 27,606.47 | 1,231.32 | 6.39 | 192.73 | 4,894.33 | |
Final-set | 22,480 | 37,129.39 | 1,563.81 | 8.57 | 182.46 | 4,697.94 | |
