Fig. 11 | Scientific Data

Fig. 11

From: Petagraph: A large-scale unifying knowledge graph framework for integrating biomolecular and biomedical data

Fig. 11

Validation using embeddings and dimensionality reduction. UMAP representations of 100-dimensional Node2Vec embeddings of subsets of Concept nodes in an example subgraph, created around 12 abnormal heart morphology phenotypes and 2 blood cancer phenotypes by including Petagraph nodes 1 or 2 hops away from these source nodes. (a) Gene or Genome Concept nodes vs. Disease or Syndrome. (b) Neoplastic Processes Concept nodes vs. Clinical Drugs. (c) Perturbagen Concept nodes vs. Genes or Genomes and (d) Organ Component vs. Cell vs. Molecular Function Concept nodes.

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