Table 2 Ontologies added to the existing UMLS collection by UBKG.
SAB | Name | Data Type | Platform |
|---|---|---|---|
PATO | Phenotypic Quality Ontology | Ontology | OBO Foundry |
UBERON | Uber Anatomy Ontology51 | Ontology | OBO Foundry |
CL | Cell Ontology85 | Ontology | OBO Foundry |
DOID | Human Disease Ontology86 | Ontology | OBO Foundry |
OBI | Ontology for Biomedical Investigations | Ontology | OBO Foundry |
OBIB | Ontology for Biobanking | Ontology | NCBO BioPortal |
EDAM | Ontology bioscientific data analysis and data management | Ontology | EDAM |
HSAPDV | Human Developmental Stages Ontology | Ontology | OBO Foundry |
SBO | Systems Biology Ontology | Ontology | SBO |
MI | Molecular Interactions | Ontology | OBO Foundry |
CHEBI | CHEBI Integrated Role Ontology | Ontology | OBO Foundry |
MP | Mammalian Phenotype Ontology | Ontology | OBO Foundry |
ORDO | Orphanet Rare Disease Ontology | Ontology | NCBO BioPortal |
UNIPROTKB | UniProtKB | Reference | UniProt |
UO | Units of Measure Ontology | Ontology | NCBO BioPortal |
MONDO | MONDO Disease Ontology | Ontology | OBO Foundry |
EFO | Experimental Factor Ontology | Ontology | NCBO BioPortal |
PGO | Pseudogene | Ontology | NCBO BioPortal |
GENCODE_ONT | GenCode ontology support (value sets) | Ontology | SimpleKnowledge |
GENCODE | GENCODE annotations and metadata | Reference | custom (translation of FTP download) |
