Table 3 Genomic data mappings added to the UBKG to create Petagraph.
Dataset and citation | Graph SAB | # of Concept nodes added | % of total Concept nodes | # of Concept - to - Concept Relationships | % total graph of Concept - to - Concept relationships | Edges with SABs | URL(s) |
|---|---|---|---|---|---|---|---|
HCOP: Human to Mouse Ortholog mappings | HCOP | 0 | 0% | 671,046 | 0.56% | MGI, HGNC | |
Mouse Gene to Phenotype mappings (IMPC/KOMP2) | MPMGI | 0 | 0% | 234,043 | 0.2% | MGI, MP | http://ftp.ebi.ac.uk/pub/databases/impc/all-data-releases/latest/results/genotype-phenotype-assertions-ALL.csv.gz, http://ftp.ebi.ac.uk/pub/databases/impc/all-data-releases/latest/results/statistical-results-ALL.csv.gz, http://www.informatics.jax.org/downloads/reports/MGI_PhenoGenoMP.rpt, http://www.informatics.jax.org/downloads/reports/MGI_GenePheno.rpt, http://www.informatics.jax.org/downloads/reports/MGI_Geno_DiseaseDO.rpt |
Human Gene to Phenotype mappings (MONDO) | HGNCHPO | 0 | 0% | 671,046 | 0.56% | HGNC, HPO | |
Human to Mouse Phenotypes (PheKnoWLator) | HPOMP | 0 | 0% | 1,785 | 0.00151% | HPO, MP | See HPOMP in Methods |
Human Ensembl to Rat Ensembl mappings | RATHCOP | 0 | 0% | 42,371 | 0.036% | ENSEMBL (Human), ENSEMBL (Rat) | |
GENCODE to HSCLO38 mappings | GENCODEHSCLO38 | 0 | 0% | 591,101 | 0.5% | GENCODE, HSCLO38 | See Table 9 |
