Table 8 List of the 4DN dot calls files, their description and download URL.

From: Petagraph: A large-scale unifying knowledge graph framework for integrating biomolecular and biomedical data

File Accession

Dataset Description

URL

4DNFIEY8UT8A

in situ Hi-C on HCT-116 (HCT-116-RAD21-mAC)

https://data.4dnucleome.org/files-processed/4DNFIEY8UT8A/

4DNFIOQLL854

Replicates of in situ Hi-C on untreated HCT116 WAPL-mAID2 cells

https://data.4dnucleome.org/files-processed/4DNFIOQLL854/

4DNFILP7BD5H

Replicates of in situ Hi-C on Auxin treated HCT116 WAPL-mAID2 cells

https://data.4dnucleome.org/files-processed/4DNFILP7BD5H/

4DNFILKW1NH2

Hi-C experiments on H1-hESC crosslinked with both FA and DSG, digested with DpnII.

https://data.4dnucleome.org/files-processed/4DNFILKW1NH2/

4DNFI3GNGT17

Hi-C experiments on H1-hESC crosslinked with both FA and DSG, digested with DpnII.

https://data.4dnucleome.org/files-processed/4DNFI3GNGT17/

4DNFIEEF14ST

Hi-C experiments on H1-hESC crosslinked with both FA and DSG, digested with DpnII.

https://data.4dnucleome.org/files-processed/4DNFIEEF14ST/

4DNFI4PMUZNU

Hi-C experiments on H1-hESC crosslinked with both FA and DSG, digested with DpnII.

https://data.4dnucleome.org/files-processed/4DNFI4PMUZNU/

4DNFI8NCHTIR

Hi-C on HFFc6 (Tier 1) with DpnII

https://data.4dnucleome.org/files-processed/4DNFI8NCHTIR/

4DNFIVO3FNLK

Hi-C on HFFc6 (Tier 1) with DpnII

https://data.4dnucleome.org/files-processed/4DNFIVO3FNLK/

4DNFIY71465K

Hi-C on HFFc6 (Tier 1) with DpnII

https://data.4dnucleome.org/files-processed/4DNFIY71465K/

4DNFILSK2QNY

Hi-C on HFFc6 (Tier 1) with DpnII

https://data.4dnucleome.org/files-processed/4DNFILSK2QNY/

4DNFIWEN3L7Y

Hi-C on HFFc6 (Tier 1) with DpnII

https://data.4dnucleome.org/files-processed/4DNFIWEN3L7Y/

4DNFIIQP46FO

MicroC Libraries from HFFc6 cells with 3 biological replicates, FA and DSG cross-linked, MNase digestion

https://data.4dnucleome.org/files-processed/4DNFIIQP46FO/

4DNFI212GCZW

Hi-C experiments on HFFc6 crosslinked with both FA and DSG, digested with DpnII.

https://data.4dnucleome.org/files-processed/4DNFI212GCZW/

4DNFI2K9STD5

Hi-C experiments on HFFc6 crosslinked with both FA and DSG, digested with DdeI.

https://data.4dnucleome.org/files-processed/4DNFI2K9STD5/

4DNFIQ48U7UJ

Hi-C experiments on HFFc6 crosslinked with both FA and DSG, digested with DdeI and DpnII.

https://data.4dnucleome.org/files-processed/4DNFIQ48U7UJ/

4DNFI3RMWQ85

MicroC Libraries from H1ESC cells from 2 biological replicates, FA and DSG cross-linked, MNase digestion

https://data.4dnucleome.org/files-processed/4DNFI3RMWQ85/

4DNFI3O1OTN4

in situ Hi-C on H1-hESC (Tier 1) with DpnII

https://data.4dnucleome.org/files-processed/4DNFI3O1OTN4/

4DNFI49A9Z1K

Micro-C experiments on H1 derived endoderm, differentiated using the 4DN protocol.

https://data.4dnucleome.org/files-processed/4DNFI49A9Z1K/

4DNFIPTEIICR

Hi-C experiments on H1 derived endoderm, differentiated using the 4DN protocol. Cells crosslinked with FA and digested with DpnII.

https://data.4dnucleome.org/files-processed/4DNFIPTEIICR/

4DNFIW5Z7XD3

Hi-C experiments on H1 derived endoderm, differentiated using the protocol from Rene Maehr lab. Cells crosslinked with FA and digested w…

https://data.4dnucleome.org/files-processed/4DNFIW5Z7XD3/