Table 8 List of the 4DN dot calls files, their description and download URL.
File Accession | Dataset Description | URL |
|---|---|---|
4DNFIEY8UT8A | in situ Hi-C on HCT-116 (HCT-116-RAD21-mAC) | |
4DNFIOQLL854 | Replicates of in situ Hi-C on untreated HCT116 WAPL-mAID2 cells | |
4DNFILP7BD5H | Replicates of in situ Hi-C on Auxin treated HCT116 WAPL-mAID2 cells | |
4DNFILKW1NH2 | Hi-C experiments on H1-hESC crosslinked with both FA and DSG, digested with DpnII. | |
4DNFI3GNGT17 | Hi-C experiments on H1-hESC crosslinked with both FA and DSG, digested with DpnII. | |
4DNFIEEF14ST | Hi-C experiments on H1-hESC crosslinked with both FA and DSG, digested with DpnII. | |
4DNFI4PMUZNU | Hi-C experiments on H1-hESC crosslinked with both FA and DSG, digested with DpnII. | |
4DNFI8NCHTIR | Hi-C on HFFc6 (Tier 1) with DpnII | |
4DNFIVO3FNLK | Hi-C on HFFc6 (Tier 1) with DpnII | |
4DNFIY71465K | Hi-C on HFFc6 (Tier 1) with DpnII | |
4DNFILSK2QNY | Hi-C on HFFc6 (Tier 1) with DpnII | |
4DNFIWEN3L7Y | Hi-C on HFFc6 (Tier 1) with DpnII | |
4DNFIIQP46FO | MicroC Libraries from HFFc6 cells with 3 biological replicates, FA and DSG cross-linked, MNase digestion | |
4DNFI212GCZW | Hi-C experiments on HFFc6 crosslinked with both FA and DSG, digested with DpnII. | |
4DNFI2K9STD5 | Hi-C experiments on HFFc6 crosslinked with both FA and DSG, digested with DdeI. | |
4DNFIQ48U7UJ | Hi-C experiments on HFFc6 crosslinked with both FA and DSG, digested with DdeI and DpnII. | |
4DNFI3RMWQ85 | MicroC Libraries from H1ESC cells from 2 biological replicates, FA and DSG cross-linked, MNase digestion | |
4DNFI3O1OTN4 | in situ Hi-C on H1-hESC (Tier 1) with DpnII | |
4DNFI49A9Z1K | Micro-C experiments on H1 derived endoderm, differentiated using the 4DN protocol. | |
4DNFIPTEIICR | Hi-C experiments on H1 derived endoderm, differentiated using the 4DN protocol. Cells crosslinked with FA and digested with DpnII. | |
4DNFIW5Z7XD3 | Hi-C experiments on H1 derived endoderm, differentiated using the protocol from Rene Maehr lab. Cells crosslinked with FA and digested w… |