Table 4 Summary of the Ribo-seq reads.
From: Transcriptome and translatome profiling of Col-0 and grp7grp8 under ABA treatment in Arabidopsis
Gene type | Condition | Replicate | Number of raw reads | Number of clean reads | After remove ncRNA | Uniquely mapped reads | Percentage of Uniquely mapped reads (%) | Mapped reads within CDS |
|---|---|---|---|---|---|---|---|---|
Col-0 | Mock | 1 | 36,680,665 | 23,713,458 | 23,088,433 | 12,605,586 | 54.60 | 3,639,375 |
2 | 31,013,398 | 21,307,130 | 20,739,296 | 11,692,363 | 56.38 | 3,223,834 | ||
3 | 28,838,006 | 19,599,188 | 19,090,235 | 10,712,091 | 56.11 | 2,941,111 | ||
ABA | 1 | 32,559,042 | 23,563,852 | 23,045,378 | 13,583,164 | 58.94 | 1,293,694 | |
2 | 39,828,919 | 28,784,444 | 28,110,183 | 16,714,091 | 59.46 | 1,579,503 | ||
3 | 42,711,145 | 30,857,713 | 30,117,546 | 17,905,645 | 59.45 | 1,684,943 | ||
grp7grp8 | Mock | 1 | 46,342,962 | 30,062,441 | 29,115,084 | 14,516,651 | 49.86 | 5,302,471 |
2 | 56,190,279 | 36,740,995 | 35,665,597 | 18,137,651 | 50.85 | 6,280,516 | ||
3 | 35,340,688 | 23,791,037 | 23,070,432 | 11,767,806 | 51.01 | 4,062,081 | ||
ABA | 1 | 33,426,634 | 23,182,728 | 21,811,662 | 10,905,432 | 50.00 | 2,861,028 | |
2 | 32,271,972 | 22,017,031 | 20,675,021 | 10,167,630 | 49.18 | 2,694,184 | ||
3 | 31,895,956 | 22,071,314 | 20,701,214 | 10,096,134 | 48.77 | 2,864,056 |
