Table 1 Statistics for the genome assembly and annotation of B. brassicae. N.A.: not available.
From: A chromosome-level genome assembly of the cabbage aphid Brevicoryne brassicae
Statistical feature | This study | Ref. 9 |
|---|---|---|
Genome size (Mb) | 429.99 | 345.20 |
Number of chromosomes | 16 | 16 |
Contig number | 131 | 26,048 |
Contig N50 (Mb) | 16.79 | 0.039 |
Scaffold number | 92 | 15,790 |
Scaffold N50 (Mb) | 93.31 | 41 |
Average gap length (bp) | 100 | 115 |
Number of gaps | 39 | 10,238 |
Gnome BUSCO complete rate (%) | 99.24 | 99.20 |
Protein BUSCO complete rate (%) | 98.65 | 99.16 |
Percentage of CEGMA genes (%) | 95.16 | 94.76 |
GC content (%) | 29.22 | 29.08 |
All SNP | 203,407 | N.A. |
Percentage of SNPs (%) | 0.047 | N.A. |
Percentage of Heterozygosis SNPs (%) | 0.047 | N.A. |
Percentage of Homology SNPs (%) | 0.000010 | N.A. |
Protein-coding genes | 22,671 | 22,367 |
lncRNA genes | 3,594 | N.A. |
Repeat (%) | 32.48 | N.A. |
