Fig. 1

The Epicoccum sorghinum strain NJC07 genome. (A) Circos plot illustrating the nuclear genome (32,694,839 bp), with tracks from the outermost (A) to innermost (H) representing various genomic and transcriptome features: contigs, GC content, gene content, effectors, biosynthetic gene clusters, differentially expressed genes (DEGs) at 48 hours post-inoculation (hpi) and DEGs at 96 hpi. Contigs marked with asterisks represent full-length chromosomes sequenced from telomere to telomere. Effectors are denoted by red dots (≤3% cysteine residues) and blue dots (cysteine-rich effectors with >3% cysteine residues). CAZymes are represented by red dots (cellulolytic), brown dots (hemicellulolytic), purple dots (ligninolytic), blue dots (pectinolytic), teal dots (starch-degrading) and green dots (inulin-degrading). DEGs at 48 and 96 hpi are shown as red dots (upregulated), green dots (downregulated), and non-DEGs are denoted by grey dots. (B) Circos plot depicting the mitochondrial genome (61,235 bp), with tracks from the outermost to innermost showing contig 23, GC content and gene content.