Table 3 Classification of repeat annotation in Aegilops mutica.
From: Chromosome-level haplotype-resolved genome assembly of bread wheat’s wild relative Aegilops mutica
Class | number of elements | length occupied (bp) | percentage of sequence | |
|---|---|---|---|---|
Retrotransposons | SINEs | 15,272 | 3,273,793 | 0.07 |
LINEs | 85,672 | 53,605,290 | 1.15 | |
LTRs: Copia | 257,964 | 819,426,959 | 17.60 | |
LTRs: Gypsy | 790,768 | 1,684,143,923 | 36.18 | |
LTRs: Unknown | 738,739 | 222,119,274 | 4.78 | |
DNA transposons | hobo-Activator | 12,896 | 3,357,337 | 0.07 |
Tc1-IS630-Pogo | 64,769 | 8,885,843 | 0.19 | |
Tourist/Harbinger | 28,203 | 8,444,080 | 0.18 | |
Other | 794,895 | 515,890,401 | 11.09 | |
Unclassified | --- | 672,181 | 265,443,787 | 5.70 |
Total | 3,461,359 | 3,584,590,687 | 77.01 |
