Table 3 Annotation metrics.
From: Chromosome-level de novo genome assembly of wild, anoxia-tolerant crucian carp, Carassius carassius
Attribute | ‘old_BRAKER’ | BRAKER3 | BRAKER3 + PASA |
|---|---|---|---|
Number genesa | 79,060 | 45,771 | 45,667 |
Number transcripts | 129,667 | 63,098 | 82,557 |
Number multi-exonic genes | 50,080 | 41,872 | 42,523 |
Number mono-exonic genes | 28,980 | 3,899 | 3,144 |
Number of 5′-UTRs | 38,389 | 1 | 44,666 |
Number of 3′-UTRs | 39,491 | 1 | 45,265 |
Mean multi-exonic CDS size (bp) | 4,770 | 2,807 | 5,023 |
Median multi-exonic CDS size (bp) | 2,344 | 1,410 | 2,585 |
Median number exonsb | 10 | 8 | 10 |
Unique IPR terms detected | 14,189 | ||
Genes with Interpro (IPR) term | 43,617 | ||
Genes with Swissprot match and GO term(s) | 41,373 | ||
Genes with KEGG orthologs (KO) | 29,798 |
