Table 3 Genomic characteristics of two Trichophyton species.
From: Haplotype-resolved genomes of Trichophyton mentagrophytes and Trichophyton tonsurans
Trichophyton mentagrophytes | Trichophyton tonsurans | |||||
|---|---|---|---|---|---|---|
Primary | Haploid 1 | Haploid 2 | Primary | Haploid 1 | Haploid 2 | |
Genome Size (bp) | 24,488,495 | 24,439,808 | 23,804,763 | 25,244,836 | 25,244,837 | 24,563,376 |
Contig Number | 19 | 19 | 7 | 24 | 25 | 6 |
Contig N50 (bp) | 6,473,416 | 6,631,083 | 11,921,821 | 12,654,034 | 12,654,034 | 12,653,795 |
Contig N90 (bp) | 5,020,745 | 5,020,745 | 4,999,054 | 5,076,093 | 5,076,093 | 5,076,094 |
Pesudochromosome Number | 3 | 3 | 3 | 3 | 3 | 3 |
Repeat Content | 8.89% | 8.87% | 7.33% | 9.99% | 9.99% | 8.89% |
Gene Number | 7577 | 7567 | 7649 | 7519 | 7527 | 7541 |
Alternative Spliced Genes Number | 1965 | 1958 | 1969 | 1826 | 1830 | 1828 |
lncRNA Number | 503 | 500 | 509 | 421 | 427 | 438 |
Average Exon number per Gene | 3.28 | 3.27 | 3.27 | 3.26 | 3.25 | 3.25 |
Average CDS Length per Gene | 1565 | 1564 | 1564 | 1557 | 1556 | 1556 |
Average Intron Length per Gene | 183 | 183 | 183 | 183 | 182 | 181 |
BUSCO | 99.10% | 98.50% | 97.80% | 99% | 99% | 99% |
