Table 5 Repeat classification and content in the two Trichophyton genomes.
From: Haplotype-resolved genomes of Trichophyton mentagrophytes and Trichophyton tonsurans
Class | Trichophyton mentagrophytes | Trichophyton tonsurans | ||||
|---|---|---|---|---|---|---|
Number | Length | Ratio | Number | Length | Ratio | |
Total | 12553 | 2,177,190 | 8.89% | 13620 | 2523399 | 9.99% |
Interspersed Repeats | 547 | 1,383,656 | 5.65% | 921 | 1614649 | 6.39% |
Retroelements | 312 | 1,116,413 | 4.55% | 661 | 1525870 | 6.04% |
LTR | 312 | 1,116,413 | 4.55% | 528 | 947049 | 3.75% |
Gypsy | 312 | 1,116,413 | 4.55% | 363 | 895414 | 3.54% |
Unknown | 0 | 0 | 0 | 161 | 37768 | 0.14% |
Copia | 0 | 0 | 0.00% | 4 | 13874 | 0.05% |
LINE | 0 | 0 | 0.00% | 133 | 578927 | 2.29% |
Tad1 | 0 | 0 | 0.00% | 133 | 578927 | 2.29% |
DNA transposons | 0 | 0 | 0.00% | 47 | 44621 | 0.17% |
TcMar-Fot1 | 0 | 0 | 0.00% | 44 | 41106 | 0.16% |
Crypton-F | 0 | 0 | 0.00% | 3 | 3515 | 0.01% |
Unknown | 235 | 268,830 | 1.09% | 213 | 47398 | 0.18% |
Non-interspersed Repeats | 12006 | 812,374 | 3.31% | 12699 | 941939 | 3.73% |
Simple_repeat | 10359 | 415,685 | 1.69% | 10952 | 432859 | 1.71% |
rRNA | 175 | 320,010 | 1.30% | 245 | 429937 | 1.70% |
Low_complexity | 1472 | 78,312 | 0.31% | 1502 | 81532 | 0.32% |
