Table 1 Sequencing statistics for rare minnow embryos at the blastula (B), gastrula (G), and optic rudimen.
From: Transcriptomic profiling of three embryonic development stages in Rare Minnow (Gobiocypris rarus)
Sample | Pass Filter Reads | Pass Filter Data (bp) | Q20% | Q30% | Total Mapped | Uniquely Mapped | Insert Size(bp) | Mapped to Gene | Mapped to InterGene | Mapped to Exon | Genes with More Than One Read Count | Total number of genes | Proportion of Genes with More Than One Read Count |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
B1 | 39568932 | 5966248258 | 98.09 | 94.59 | 38348422 (96.92%) | 36222538 (94.46%) | 380 | 25418618 (70.17%) | 10803920 (29.83%) | 23892646 (94.00%) | 17013 | 25146 | 67.66% |
B2 | 44895928 | 6766439264 | 98.03 | 94.49 | 43449921 (96.78%) | 40987515 (94.33%) | 380 | 29168390 (71.16%) | 11819125 (28.84%) | 27505754 (94.30%) | 17103 | 25146 | 68.01% |
B3 | 44769474 | 6750538328 | 98.1 | 94.66 | 43322361 (96.77%) | 40820717 (94.23%) | 380 | 29246317 (71.65%) | 11574400 (28.35%) | 27593397 (94.35%) | 17023 | 25146 | 67.70% |
G1 | 43347384 | 6531264237 | 98.07 | 94.86 | 41537121 (95.82%) | 38352333 (92.33%) | 380 | 26252266 (68.45%) | 12100067 (31.55%) | 23713916 (90.33%) | 17519 | 25146 | 69.67% |
G2 | 42926918 | 6464078977 | 97.92 | 94.56 | 41051738 (95.63%) | 37899897 (92.32%) | 380 | 26598969 (70.18%) | 11300928 (29.82%) | 24169135 (90.86%) | 17272 | 25146 | 68.69% |
G3 | 39470732 | 5947064297 | 97.91 | 94.16 | 37806399 (95.78%) | 34514571 (91.29%) | 380 | 22901962 (66.35%) | 11612609 (33.65%) | 20345810 (88.84%) | 17516 | 25146 | 69.66% |
O1 | 42141654 | 6341274532 | 98.04 | 94.99 | 40559033 (96.24%) | 37838138 (93.29%) | 380 | 27145614 (71.74%) | 10692524 (28.26%) | 24997867 (92.09%) | 19211 | 25146 | 76.40% |
O2 | 48380572 | 7291324270 | 98.22 | 94.94 | 46565894 (96.25%) | 43342337 (93.08%) | 380 | 31073433 (71.69%) | 12268904 (28.31%) | 28632526 (92.14%) | 19379 | 25146 | 77.07% |
O3 | 45383664 | 6838463027 | 98.28 | 95.09 | 43706606 (96.30%) | 40721159 (93.17%) | 380 | 28978091 (71.16%) | 11743068 (28.84%) | 26570545 (91.69%) | 19397 | 25146 | 77.14% |
