Fig. 2
From: A near telomere-to-telomere phased reference assembly for the male mountain gorilla
Genome map showing sequencing read coverage and annotations for the new de novo, near-T2T maleG. beringei beringei genome (gberber-nt2t). The 25 largest contigs from the pseudohaplotype assembly are shown. An example T2T-sequenced chromosome is displayed (chromosome 17, contig ptg000021l) at 8× zoom with the telomeres and centromere regions, identifiable by having high coverage and low gene/LTR/SINE content, bounded in dashed lines. Circos tracks represent (a) plus (top) and minus (bottom) strand ab initio gene predictions. (b) Harbinger elements. (c) LTR/ERV repeats, where the y-axis = % divergence from the reference. (d) TcMar elements. Repeat element tracks have a y-axis ranging from zero to 50% divergence. (e) G + C % with a y-axis ranging from 20–80 G + C %. (f) SINE elements. (g) ONT read coverage (ave. = 52.87× ; see also Fig. 3). (h) Helitron elements. (i) PacBio HiFi long-read coverage (ave. = 26.77×). (j) Extended tracks of high homology/similarity (i.e., identical long repeat sequences). Circos data tracks and configurations are in Dataset S4.
