Table 2 Statistics of repeat elements genome assembly.
From: Haplotype resolved chromosome-level genome assembly of the gold barb (Barbodes semifasciolatus)
Class | Count (hap1) | Masked (bp) (hap1) | Percentages (hap1) | Count (hap2) | Masked (bp) (hap2) | Percentages (hap2) |
|---|---|---|---|---|---|---|
DNA | 3,742 | 1,130,000 | 0.15% | 11,248 | 1,831,127 | 0.24% |
LINE | 66,701 | 30,137,446 | 3.89% | 68,682 | 25,292,327 | 3.24% |
LTR | 17,7455 | 99,229,249 | 12.78% | 190,152 | 99,991,077 | 12.85% |
SINE | 27,044 | 5,207,716 | 0.68% | 21,085 | 4,380,438 | 0.56% |
TIR | 305,331 | 76,894,289 | 9.90% | 281,108 | 70,467,345 | 9.04% |
Other | 158,918 | 35,774,276 | 4.61% | 176,109 | 41,211,754 | 5.29% |
Total | 739,191 | 248,372,976 | 32.01% | 748,384 | 243,174,068 | 31.22% |
