Table 4 Classification of repetitive sequences in the P. h. homarus genome.
From: Chromosome-level genome assembly of scalloped spiny lobster Panulirus homarus homarus
Type | Denovo + Repbase | TE Proteins | Combined TEs | |||
|---|---|---|---|---|---|---|
Length (bp) | % of Genome | Length (bp) | % of Genome | Length (bp) | % of Genome | |
DNA | 255,660,900 | 9.4 | 13,576,708 | 0.5 | 267,245,274 | 9.82 |
LINE | 747,359,181 | 27.47 | 557,983,621 | 20.51 | 1,018,618,779 | 37.44 |
SINE | 457,003 | 0.02 | — | — | 457,003 | 0.02 |
LTR | 811,059,942 | 29.81 | 12,735,819 | 0.47 | 817,820,561 | 30.06 |
Other | — | — | — | — | — | — |
Unknown | 28,328,468 | 1.04 | — | — | 28,328,468 | 1.04 |
Total | 1,661,445,638 | 61.07 | 583,800,643 | 21.46 | 1678379094 | 61.69 |
