Table 4 Transposable elements classification according to Wicker et al.37 in Olea europaea cultivars ‘Frantoio’ and ‘Leccino’.
From: PacBio genome assembly of Olea europaea L. subsp. europaea cultivars Frantoio and Leccino
Cultivar | ‘Frantoio’ | ‘Leccino’ | ||
|---|---|---|---|---|
Class | Bp mask. | % mask. | Bp mask. | % mask. |
hAT (DTA) DNA_TE and MITE | 34,064,132 | 2.96 | 27,165,156 | 1.92 |
CACTA (DTC) DNA_TE and MITE | 27,483,293 | 2.39 | 27,724,730 | 1.96 |
Pif-Harbinger (DTH) DNA_TE and MITE | 21,040,797 | 1.83 | 22,235,407 | 1.57 |
Mutator (DTM) DNA_TE and MITE | 93,016,860 | 8.10 | 121,730,286 | 8.61 |
Tc1-mariner (DTT) DNA_TE and MITE | 3,703,275 | 0.32 | 2,451,638 | 0.17 |
LTR-RT Ty1-Copia | 138,554,511 | 12.08 | 151,348,585 | 10.70 |
LTR-RT Ty3-Gypsy | 195,143,475 | 17.01 | 212,229,332 | 15.01 |
LTR_unknown | 57,157,745 | 4.98 | 55,241,398 | 3.91 |
Satellite 1 | 102,869,087 | 8.62 | 242,035,084 | 16.90 |
Satellite 2 | 55,565,954 | 4.65 | 82,789,861 | 5.78 |
Satellite 3 | 41,014,775 | 4.53 | 61,743,874 | 4.31 |
Total interspersed | 769,613,904 | 67.47 | 1,006,695,531 | 70.84 |
