Table 1 Sources of data.
From: Consistently processed RNA sequencing data from 50 sources enriched for pediatric data
Source name | n | percent of all datasets |
---|---|---|
The Cancer Genome Atlas Program (TCGA)15 | 9806 | 59.6% |
2142 | 13.0% | |
Therapeutically Applicable Research to Generate Effective Treatments (TARGET)16,17,18,19,20 | 1356 | 8.2% |
Cancer Cell Line Encyclopedia (CCLE)38 | 893 | 5.4% |
Children’s Brain Tumor Network/Kids First Data Resource Center39,40 | 377 | 2.3% |
191 | 1.2% | |
Clinical collaborators | 677 | 4.1% |
Other projects via database of Genotypes and Phenotypes (dbGaP) /Short Read Archive (SRA)45,46,47,48,49,50,51,52,53,54,55,56,57,58,59,60,61,62,63,64 | 801 | 4.9% |
Other projects via European Genome-phenome Archive (EGA)65,66,67,68,69,70,71 | 203 | 1.2% |