Table 1 Statistics of the H. carnosa genome assembly and annotation.
From: Near-complete reference genome assembly of Hoya carnosa
Genome assembly | |
|---|---|
Total length of assembly (Mb) | 465.7 |
Number of contigs | 48 |
Contig N50 (Mb) | 39.3 |
Pseudochromosome number | 11 |
Scaffold N50 (Mb) | 44.1 |
Number of gaps | 5 |
Anchor rate | 99.7% |
Mapped Illumina reads | 97.9% |
Assembly BUSCOs | 98.5% |
Annotation BUSCOs | 87.1% |
GC content | 34.3% |
LAI | 27.0 |
QV | 74.1 |
Unanchored sequences (Mb) | 1.4 |
Genome annotation | |
Total length of repeats (Mb) | 258.4 |
Repeats percentage of assembly | 55.5% |
Number of protein-coding genes | 24,309 |
Average gene length (bp) | 5447.9 |
Average intron length (bp) | 707.0 |
Average exon length (bp) | 326.0 |
Non-coding RNA annotation | |
tRNA | 537 |
rRNA | 913 |
miRNA | 89 |
snoRNA | 183 |
others | 214 |
Functional annotation | |
SwissProt | 15,101 (62.1%) |
Nr | 21,725 (89.4%) |
GO | 9,807 (40.3%) |
KEGG | 6,428 (26.4%) |
Total | 21,927 (90.2%) |
