Table 1 Genome assembly statistics of Z. macrostachya.
From: Chromosome-level Genome Assembly of the Halophytic Turfgrass Zoysia macrostachya
Polished initial assembly | After purging haplotigs | scaffolding using Omni-C | Final curated and gap-closed scaffolds | |
|---|---|---|---|---|
Data type | Oxford nanopore + illumina | Oxford nanopore + illumina | Oxford nanopore + illumina + Omni-C | Oxford nanopore + illumina + Omni-C |
Number of contigs | 95 | 69 | — | — |
Largest contig | 15,838,517 | 15,838,517 | — | — |
Number of scaffolds | — | — | 20 | 20 |
Largest scaffold | — | — | 24,092,771 | 24,067,571 |
Total length | 340,935,610 | 330,146,791 | 330,151,691 | 329,773,341 |
GC (%) | 44.09 | 44.13 | 44.13 | 44.13 |
N50 | 7,499,244 | 7,556,039 | 19,243,253 | 19,243,055 |
N90 | 3,151,836 | 3,688,857 | 11,418,452 | 11,418,352 |
auN | 7,862,106.0 | 8,100,712.7 | 17,716,003.50 | 17,689,269.4 |
L50 | 17 | 16 | 8 | 8 |
L90 | 42 | 39 | 18 | 18 |
Number of 100 bp gaps | — | — | 49 | 26 |
