Table 7 Statistics of gene structure prediction.
From: Chromosome-level genome assembly of the sea cucumber, Colochirus anceps
Type | Gene Set | Number | Average transcript length (bp) | Average CDS length (bp) | Average exons per gene (bp) | Average exon length (bp) | Average intron length (bp) |
|---|---|---|---|---|---|---|---|
De novo | Augustus | 38,721 | 25,818.34 | 1,182.46 | 5.17 | 228.55 | 5,902.64 |
SNAP | 30,351 | 97,509.24 | 604.52 | 3.69 | 163.70 | 35,986.68 | |
Homolog | Smac | 21,413 | 18,070.98 | 1,044.94 | 4.68 | 223.15 | 4,623.23 |
Ajap | 30,010 | 13,768.65 | 898.22 | 4.03 | 222.62 | 4,240.92 | |
Hleu | 34,593 | 14,650.79 | 975.92 | 4.14 | 235.58 | 4,351.33 | |
RNAseq | transcripts | 127,444 | 12,557.79 | 1,476.97 | 2.65 | 558.30 | 6,734.12 |
PASA | 26,857 | 20,193.37 | 807.45 | 4.13 | 195.51 | 6,193.84 | |
EVM | EVM | 36,060 | 25,376.98 | 1,157.29 | 5.16 | 224.23 | 5,820.47 |
PASA | PASA | 35,758 | 26,820.65 | 1,182.74 | 5.30 | 223.17 | 5,962.59 |
Final set | Final | 24,102 | 35,790.07 | 1,401.02 | 6.82 | 205.39 | 5,907.41 |
