Table 2 Sequencing and alignment metrics for each sample.
From: Whole genome sequencing data of 14 indigenous Greek goats
Sample ID | Coverage (X) | Total Gigabases (Gb) | Raw Sequences | Trimmed sequences | Trimmed sequences’ length (bases) | Alignment rate (%) |
|---|---|---|---|---|---|---|
ARID1 | 2.68 | 7.79 | 51,561,006 | 47,194,890 | 143 | 99.78 |
ARID2 | 2.67 | 7.73 | 51,198,964 | 47,191,124 | 144 | 99.83 |
DR1 | 4.49 | 13.02 | 86,238,690 | 82,509,572 | 146 | 99.74 |
DR2 | 3.06 | 8.89 | 58,847,412 | 56,450,222 | 146 | 99.83 |
INDBL | 3.22 | 9.33 | 61,770,066 | 57,735,740 | 145 | 99.85 |
INDK | 3.44 | 9.98 | 66,116,164 | 62,750,176 | 145 | 99.82 |
INDR1 | 2.87 | 8.31 | 55,024,014 | 52,329,632 | 145 | 99.81 |
INDR2 | 3.75 | 10.88 | 72,041,856 | 68,916,150 | 146 | 99.79 |
PAGKR | 3.07 | 8.89 | 58,896,036 | 56,281,150 | 146 | 99.85 |
PAGPAR | 3.73 | 10.82 | 71,645,864 | 67,349,194 | 145 | 99.79 |
SER | 2.78 | 8.06 | 53,368,654 | 50,989,412 | 146 | 99.87 |
SK1 | 3.55 | 10.29 | 68,146,926 | 65,461,350 | 146 | 99.82 |
SK2 | 2.63 | 7.62 | 50,484,704 | 47,740,952 | 146 | 99.82 |
SK3 | 2.52 | 7.32 | 48,484,258 | 45,411,270 | 145 | 99.81 |
