Table 3 Number of genotyped, polymorphic variants (total variants, SNPs only, and INDELs only), missingness, and Transition to Transversion (Ti/Tv) ratio for each sample.
From: Whole genome sequencing data of 14 indigenous Greek goats
Sample ID | No. of total variants | No. of SNPs | No. of INDELs | Missingness | Ti/Tv ratio |
|---|---|---|---|---|---|
ARID1 | 2,970,298 | 2,700,904 | 269,394 | 0.270 | 2.373 |
ARID2 | 3,003,428 | 2,728,220 | 275,208 | 0.267 | 2.369 |
DR1 | 4,360,057 | 3,942,461 | 417,596 | 0.135 | 2.363 |
DR2 | 3,278,208 | 2,971,758 | 306,450 | 0.233 | 2.367 |
INDBL | 3,249,256 | 2,950,535 | 298,721 | 0.241 | 2.373 |
INDK | 3,600,551 | 3,264,215 | 336,336 | 0.208 | 2.370 |
INDR1 | 3,007,885 | 2,731,465 | 276,420 | 0.272 | 2.370 |
INDR2 | 3,845,171 | 3,482,153 | 363,018 | 0.180 | 2.370 |
PAGKR | 3,284,197 | 2,977,532 | 306,665 | 0.241 | 2.370 |
PAGPAR | 3,779,287 | 3,425,218 | 354,069 | 0.189 | 2.369 |
SER | 3,329,507 | 3,019,547 | 309,960 | 0.235 | 2.369 |
SK1 | 3,774,549 | 3,416,949 | 357,600 | 0.185 | 2.368 |
SK2 | 3,086,853 | 2,804,302 | 282,551 | 0.262 | 2.375 |
SK3 | 2,884,133 | 2,623,734 | 260,399 | 0.286 | 2.388 |
