Table 4 Variant metrics per chromosome.
From: Whole genome sequencing data of 14 indigenous Greek goats
Chromosome | No. of variants | No. of SNPs | No. of INDELs | SNPs/INDELs ratio | SNP density (per 1 Kb) (mean ± s.d.) |
|---|---|---|---|---|---|
1 | 942,849 | 840,464 | 102,385 | 8.21 | 5.99 (±4.40) |
2 | 753,934 | 671,874 | 82,060 | 8.19 | 5.52 (±4.11) |
3 | 656,413 | 586,095 | 70,318 | 8.33 | 5.47 (±4.46) |
4 | 699,736 | 625,742 | 73,994 | 8.46 | 5.80 (±4.32) |
5 | 656,035 | 585,707 | 70,328 | 8.33 | 5.51 (±4.28) |
6 | 753,888 | 671,522 | 82,366 | 8.15 | 6.41 (±4.68) |
7 | 600,708 | 535,571 | 65,137 | 8.22 | 5.54 (±4.58) |
8 | 632,261 | 563,636 | 68,625 | 8.21 | 5.61 (±4.22) |
9 | 518,743 | 462,427 | 56,316 | 8.21 | 5.67 (±4.19) |
10 | 543,164 | 483,863 | 59,301 | 8.16 | 5.38 (±4.37) |
11 | 573,157 | 512,569 | 60,588 | 8.46 | 5.40 (±4.02) |
12 | 536,151 | 475,328 | 60,823 | 7.81 | 6.14 (±4.93) |
13 | 438,431 | 392,648 | 45,783 | 8.58 | 5.28 (±3.96) |
14 | 561,621 | 501,526 | 60,095 | 8.35 | 5.93 (±4.47) |
15 | 513,896 | 459,395 | 54,501 | 8.43 | 6.27 (±5.00) |
16 | 456,317 | 407,596 | 48,721 | 8.37 | 5.75 (±4.50) |
17 | 414,389 | 368,711 | 45,678 | 8.07 | 5.83 (±4.40) |
18 | 342,904 | 303,382 | 39,522 | 7.68 | 5.10 (±4.16) |
19 | 331,235 | 296,114 | 35,121 | 8.43 | 5.30 (±4.59) |
20 | 450,680 | 403,492 | 47,188 | 8.55 | 6.28 (±4.49) |
21 | 397,578 | 354,728 | 42,850 | 8.28 | 5.73 (±4.63) |
22 | 319,262 | 283,946 | 35,316 | 8.04 | 5.30 (±4.00) |
23 | 317,414 | 281,867 | 35,547 | 7.93 | 6.50 (±6.63) |
24 | 369,645 | 329,861 | 39,784 | 8.29 | 5.93 (±4.34) |
25 | 236,677 | 212,483 | 24,194 | 8.78 | 5.52 (±4.13) |
26 | 314,321 | 280,902 | 33,419 | 8.41 | 6.11 (±4.66) |
27 | 266,425 | 237,269 | 29,156 | 8.14 | 5.96 (±4.46) |
28 | 291,774 | 261,944 | 29,830 | 8.78 | 6.53 (±4.88) |
29 | 311,351 | 279,784 | 31,567 | 8.86 | 6.07 (±4.61) |
