Table 1 The distribution of SNPs located in different genomic regions for three rice pedigrees.

From: Pedigree-based genome re-sequencing reveals genetic variation patterns of elite backbone varieties during modern rice improvement

Pedigree

Varieties number

Inter-genic

Intron

5′UTR

CDS

3′UTR

Non coding exon

Total

dn/ds

GC2H

11

4,406,715

304,538

67,004

201,979

109,810

9,414

5,099,460

1.29

HHZ

22

4,738,401

319,460

70,466

210,384

114,793

10,289

5,463,793

1.30

SH527

23

4,417,701

301,779

68,383

208,342

109,909

9,478

5,115,592

1.30

Total

52

5,610,003

373,999

83,554

249,646

134,991

12,148

6,464,341

1.30

  1. Note: GC2H means GC2H pedigree; HHZ means HHZ pedigree; SH527 means SH527 pedigree.
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