Table 1 Statistics of Illumina sequencing data.
From: Transcriptomic profile of tobacco in response to Phytophthora nicotianae infection
Samples | Raw reads | Clean reads | Clean bases | Q20 (%) | Q30 (%) | Notes |
|---|---|---|---|---|---|---|
HD_72 h_1 | 55,333,426 | 52,820,790 | 7.92 G | 96.48 | 91.8 | replicate 1 |
HD_72 h_2 | 54,001,208 | 51,490,186 | 7.72 G | 96.48 | 91.77 | replicate 2 |
HD_72 h_3 | 53,280,954 | 51,467,222 | 7.72 G | 96.24 | 91.34 | replicate 3 |
HD_12 h_1 | 62,883,914 | 60,129,216 | 9.02 G | 96.25 | 91.56 | replicate 1 |
HD_12 h_2 | 58,867,280 | 56,178,894 | 8.43 G | 96.41 | 91.81 | replicate 2 |
HD_12 h_3 | 51,914,688 | 49,516,308 | 7.43 G | 96.45 | 91.92 | replicate 3 |
HD_ck_1 | 58,054,930 | 55,815,774 | 8.37 G | 96.41 | 91.71 | replicate 1 |
HD_ck_2 | 58,003,858 | 55,727,534 | 8.36 G | 96.25 | 91.41 | replicate 2 |
HD_ck_3 | 43,483,010 | 41,760,824 | 6.26 G | 96.24 | 91.44 | replicate 3 |
RBST_72 h_1 | 51,844,458 | 48,777,122 | 7.32 G | 95.77 | 90.46 | replicate 1 |
RBST_72 h_2 | 59,056,054 | 55,180,180 | 8.28 G | 95.85 | 90.58 | replicate 2 |
RBST_72 h_3 | 54,507,452 | 51,240,810 | 7.69 G | 95.51 | 89.99 | replicate 3 |
RBST_12 h_1 | 50,379,538 | 47,397,668 | 7.11 G | 95.07 | 89.23 | replicate 1 |
RBST_12 h_2 | 54,390,186 | 51,261,418 | 7.69 G | 95.25 | 89.61 | replicate 2 |
RBST_12 h_3 | 49,216,216 | 46,394,664 | 6.96 G | 95.23 | 89.55 | replicate 3 |
RBST_ck_1 | 64,574,816 | 61,315,592 | 9.2 G | 96.56 | 91.92 | replicate 1 |
RBST_ck_2 | 59,395,738 | 57,072,576 | 8.56 G | 96.5 | 91.85 | replicate 2 |
RBST_ck_3 | 54,730,068 | 52,547,094 | 7.88 G | 96.42 | 91.7 | replicate 3 |
Total | 993,917,794 | 946,093,872 | 141.92 G | 96.08 | 91.09 |  |
