Table 3 Summary table showing differentially abundant bacterial clades at the Family level detected by LEfSe.

From: Bioinformatic Approaches Including Predictive Metagenomic Profiling Reveal Characteristics of Bacterial Response to Petroleum Hydrocarbon Contamination in Diverse Environments

Differentially abundant Taxa	Habitat ^†	Taxonomy ^‡
Iamiaceae	A	Bacteria\|Actinobacteria\|Acidimicrobiia\|Acidimicrobiales\|Iamiaceae
Microbacteriaceae	A	Bacteria\|Actinobacteria\|Actinobacteria\|Actinomycetales\|Microbacteriaceae
mb2424	C	Bacteria\|Acidobacteria\|Acidobacteria 6\|iii1 15\|mb2424
Ellin6075	C	Bacteria\|Acidobacteria\|Chloracidobacteria\|RB41\|Ellin6075
Dietziaceae	C	Bacteria\|Actinobacteria\|Actinobacteria\|Actinomycetales\|Dietziaceae
Geodermatophilaceae	C	Bacteria\|Actinobacteria\|Actinobacteria\|Actinomycetales\|Geodermatophilaceae
Micromonosporaceae	C	Bacteria\|Actinobacteria\|Actinobacteria\|Actinomycetales\|Micromonosporaceae
Mycobacteriaceae	C	Bacteria\|Actinobacteria\|Actinobacteria\|Actinomycetales\|Mycobacteriaceae
Nocardiaceae	C	Bacteria\|Actinobacteria\|Actinobacteria\|Actinomycetales\|Nocardiaceae
Solirubrobacteraceae	C	Bacteria\|Actinobacteria\|Thermoleophilia\|Solirubrobacterales\|Solirubrobacteraceae
Cytophagaceae	C	Bacteria\|Bacteroidetes\|Cytophagia\|Cytophagales\|Cytophagaceae
Kouleothrixaceae	C	Bacteria\|Chloroflexi\|Chloroflexi\|Roseiflexales\|Kouleothrixaceae
Dolo 23	C	Bacteria\|Chloroflexi\|TK10\|AKYG885\|Dolo 23
Gemmataceae	C	Bacteria\|Planctomycetes\|Planctomycetia\|Gemmatales\|Gemmataceae
Pirellulaceae	C	Bacteria\|Planctomycetes\|Planctomycetia\|Pirellulales\|Pirellulaceae
Planctomycetaceae	C	Bacteria\|Planctomycetes\|Planctomycetia\|Planctomycetales\|Planctomycetaceae
Myxococcaceae	C	Bacteria\|Proteobacteria\|Deltaproteobacteria\|Myxococcales\|Myxococcaceae
Opitutaceae	C	Bacteria\|Verrucomicrobia\|Opitutae\|Opitutales\|Opitutaceae
Chthoniobacteraceae	C	Bacteria\|Verrucomicrobia\|Spartobacteria\|Chthoniobacterales\|Chthoniobacteraceae
Flavobacteriaceae	DWH	Bacteria\|Bacteroidetes\|Flavobacteriia\|Flavobacteriales\|Flavobacteriaceae
Weeksellaceae	DWH	Bacteria\|Bacteroidetes\|Flavobacteriia\|Flavobacteriales\|Weeksellaceae
Rhodobacteraceae	DWH	Bacteria\|Proteobacteria\|Alphaproteobacteria\|Rhodobacterales\|Rhodobacteraceae
Alteromonadaceae	DWH	Bacteria\|Proteobacteria\|Gammaproteobacteria\|Alteromonadales\|Alteromonadaceae
Colwelliaceae	DWH	Bacteria\|Proteobacteria\|Gammaproteobacteria\|Alteromonadales\|Colwelliaceae
Marinicellaceae	DWH	Bacteria\|Proteobacteria\|Gammaproteobacteria\|Marinicellales\|Marinicellaceae
Xanthomonadaceae	DWH	Bacteria\|Proteobacteria\|Gammaproteobacteria\|Xanthomonadales\|Xanthomonadaceae
Verrucomicrobiaceae	DWH	Bacteria\|Verrucomicrobia\|Verrucomicrobiae\|Verrucomicrobiales\|Verrucomicrobiaceae
Acidobacteriaceae	I	Bacteria\|Acidobacteria\|Acidobacteriia\|Acidobacteriales\|Acidobacteriaceae
Koribacteraceae	I	Bacteria\|Acidobacteria\|Acidobacteriia\|Acidobacteriales\|Koribacteraceae
Chitinophagaceae	I	Bacteria\|Bacteroidetes\|Saprospirae\|Saprospirales\|Chitinophagaceae
Ignavibacteriaceae	I	Bacteria\|Chlorobi\|Ignavibacteria\|Ignavibacteriales\|Ignavibacteriaceae
Acetobacteraceae	I	Bacteria\|Proteobacteria\|Alphaproteobacteria\|Rhodospirillales\|Acetobacteraceae
Rhodospirillaceae	I	Bacteria\|Proteobacteria\|Alphaproteobacteria\|Rhodospirillales\|Rhodospirillaceae
Hydrogenophilaceae	I	Bacteria\|Proteobacteria\|Betaproteobacteria\|Hydrogenophilales\|Hydrogenophilaceae
Sinobacteraceae	I	Bacteria\|Proteobacteria\|Gammaproteobacteria\|Xanthomonadales\|Sinobacteraceae
Phycisphaeraceae	M	Bacteria\|Planctomycetes\|Phycisphaerae\|Phycisphaerales\|Phycisphaeraceae
Erythrobacteraceae	M	Bacteria\|Proteobacteria\|Alphaproteobacteria\|Sphingomonadales\|Erythrobacteraceae
Desulfuromonadaceae	M	Bacteria\|Proteobacteria\|Deltaproteobacteria\|Desulfuromonadales\|Desulfuromonadaceae
Spirochaetaceae	M	Bacteria\|Spirochaetes\|Spirochaetes\|Spirochaetales\|Spirochaetaceae
Propionibacteriaceae	OSC	Bacteria\|Actinobacteria\|Actinobacteria\|Actinomycetales\|Propionibacteriaceae
Brucellaceae	OSC	Bacteria\|Proteobacteria\|Alphaproteobacteria\|Rhizobiales\|Brucellaceae
Methylobacteriaceae	OSC	Bacteria\|Proteobacteria\|Alphaproteobacteria\|Rhizobiales\|Methylobacteriaceae
Oxalobacteraceae	OSC	Bacteria\|Proteobacteria\|Betaproteobacteria\|Burkholderiales\|Oxalobacteraceae
Enterobacteriaceae	OSC	Bacteria\|Proteobacteria\|Gammaproteobacteria\|Enterobacteriales\|Enterobacteriaceae
Moraxellaceae	OSC	Bacteria\|Proteobacteria\|Gammaproteobacteria\|Pseudomonadales\|Moraxellaceae
Rhodocyclaceae	OSTPd	Bacteria\|Proteobacteria\|Betaproteobacteria\|Rhodocyclales\|Rhodocyclaceae
Anaerolinaceae	OSTPm	Bacteria\|Chloroflexi\|Anaerolineae\|Anaerolineales\|Anaerolinaceae
Desulfobulbaceae	OSTPm	Bacteria\|Proteobacteria\|Deltaproteobacteria\|Desulfobacterales\|Desulfobulbaceae
Syntrophaceae	OSTPm	Bacteria\|Proteobacteria\|Deltaproteobacteria\|Syntrophobacterales\|Syntrophaceae
Pseudomonadaceae	OSTPm	Bacteria\|Proteobacteria\|Gammaproteobacteria\|Pseudomonadales\|Pseudomonadaceae
Peptococcaceae	OSTPu	Bacteria\|Firmicutes\|Clostridia\|Clostridiales\|Peptococcaceae
Comamonadaceae	OSTPu	Bacteria\|Proteobacteria\|Betaproteobacteria\|Burkholderiales\|Comamonadaceae
Geobacteraceae	OSTPu	Bacteria\|Proteobacteria\|Deltaproteobacteria\|Desulfuromonadales\|Geobacteraceae
Syntrophorhabdaceae	OSTPu	Bacteria\|Proteobacteria\|Deltaproteobacteria\|Syntrophobacterales\|Syntrophorhabdaceae
Gaiellaceae	Tb	Bacteria\|Actinobacteria\|Thermoleophilia\|Gaiellales\|Gaiellaceae
Caulobacteraceae	Tb	Bacteria\|Proteobacteria\|Alphaproteobacteria\|Caulobacterales\|Caulobacteraceae
Bradyrhizobiaceae	Tb	Bacteria\|Proteobacteria\|Alphaproteobacteria\|Rhizobiales\|Bradyrhizobiaceae
Hyphomicrobiaceae	Tb	Bacteria\|Proteobacteria\|Alphaproteobacteria\|Rhizobiales\|Hyphomicrobiaceae
Sporichthyaceae	Tp	Bacteria\|Actinobacteria\|Actinobacteria\|Actinomycetales\|Sporichthyaceae
Thermogemmatisporaceae	Tp	Bacteria\|Chloroflexi\|Ktedonobacteria\|Thermogemmatisporales\|Thermogemmatisporaceae
Sphingomonadaceae	Tp	Bacteria\|Proteobacteria\|Alphaproteobacteria\|Sphingomonadales\|Sphingomonadaceae
Alcaligenaceae	Tp	Bacteria\|Proteobacteria\|Betaproteobacteria\|Burkholderiales\|Alcaligenaceae
Intrasporangiaceae	Tu	Bacteria\|Actinobacteria\|Actinobacteria\|Actinomycetales\|Intrasporangiaceae
Micrococcaceae	Tu	Bacteria\|Actinobacteria\|Actinobacteria\|Actinomycetales\|Micrococcaceae
Nocardioidaceae	Tu	Bacteria\|Actinobacteria\|Actinobacteria\|Actinomycetales\|Nocardioidaceae
Burkholderiaceae	Tu	Bacteria\|Proteobacteria\|Betaproteobacteria\|Burkholderiales\|Burkholderiaceae

^†Column labelled “Habitat” represents the petroleum contaminated environment in which the corresponding taxa (as presented in column labelled “Differentially abundant Taxa”), was found to be significantly differentially abundant by LEfSe using the one class, non-strict test (Please refer to Materials and methods, and Supplementary Table S2 for details). Acronyms represent the following habitats: A: Arctic, C: China oil refineries, I: India oil refineries, M: Mangrove, DWH: Marine sediments, OSC: Oil sands core, OSTPu: Oil sands tailings pond upper, OSTPm: Oil sands tailings pond median, OSTPd: Oil sands tailings pond deep, Tb: Taiga bottom active layer, Tu: Taiga upper active layer, Tp: Taiga permafrost layer.
^‡Taxonomy is described using the following hierarchy: Kingdom|Phylum|Class|Order|Family|Genus|species.

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Table 3 Summary table showing differentially abundant bacterial clades at the Family level detected by LEfSe.

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