Table 5 Top 5 comparison between inter-chromosomal network interactions and Hi-C experiments for healthy and cancerous data.
From: RNA-Seq based genome-wide analysis reveals loss of inter-chromosomal regulation in breast cancer
Phenotype | Chr | Symbol | GeneStart | Chr | Symbol | GeneStart | Network MI | Hi-C | ||
|---|---|---|---|---|---|---|---|---|---|---|
Healthy | Cancerous | MCF10a | MCF7 | |||||||
Healthy | 3 | NR1D2 | 23986751 | 1 | PRE3 | 7844380 | 0.4491 | 0.2441 | 1.112 | 0.5389 |
22 | TEF | 41763337 | 1 | PER3 | 7844380 | 0.4416 | 0.2576 | 0.8829 | 0.445 | |
8 | ESRP1 | 95653302 | 1 | RAB25 | 156030951 | 0.4381 | 0.058* | 0.7815 | 0.9124 | |
21 | ZBTB21 | 43406940 | 1 | PLK3 | 45265897 | 0.4334 | 0.0154* | 0.7083 | 0.6709 | |
3 | NR1D2 | 23986751 | 1 | UTS2 | 7903143 | 0.4252 | 0.1402* | 1.112 | 0.5389 | |
Cancerous | 20 | CSNK2A1 | 459116 | 11 | CSNK2A3 | 11373489 | 0.150155* | 0.601748 | 0.9135 | 1.214 |
9 | CBWD1 | 121041 | 2 | CBWD2 | 114195268 | 0.247417 | 0.438327 | 0.9979 | 1.37 | |
18 | KIAA1328 | 34409069 | 9 | PGM5P2 | 69080240 | 0.127655* | 0.436005 | 0.5589 | 0.8362 | |
3 | ESRG | 54666149 | 8 | HHLA1 | 133073733 | 0.160935* | 0.405771 | 0.8386 | 0.9733 | |
11 | CSNK2A3 | 11373489 | 20 | TBC1D20 | 416124 | 0.0338788* | 0.30643 | 0.9135 | 1.214 | |
